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SRX19868352: GSM7146567: Mouse Lung tumor_KrasLA1_695_rep1; Mus musculus; ATAC-seq
1 ILLUMINA (NextSeq 500) run: 42.5M spots, 3.6G bases, 1.2Gb downloads

External Id: GSM7146567_r1
Submitted by: Swathi Arur, Genetics, UT Health MD Anderson Cancer Center
Study: Phosphorylated nuclear DICER1 promotes open chromatin state and gastric cell fate in lung adenocarcinomas [ATAC-seq]
show Abstracthide Abstract
DICER1 canonically regulates micro(mi)RNA-mediated epithelial-to-mesenchymal transition (EMT) in lung adenocarcinomas (LUADs). We discovered that KRAS/ERK pathway phosphorylates DICER1 causing its nuclear translocation; phosphomimetic Dicer1 contributes to tumorigenesis in mice. Mechanisms through which phospho-DICER1 regulates tumor progression remain undefined. Here, we show that phospho-DICER1 is expressed in invasive human LUADs and promotes late-stage tumor progression in mice with oncogenic Kras, independent of miRNAs and EMT. Strikingly, in mice, we observed that the AT2 tumor cells with phospho-DICER1 express endodermal (gastric) genes and display an open chromatin state such that there are sub-populations of tumors cells with alveolar-endodermal or only endodermal identity. Importantly, we also observed expression of gastric genes in human LUADs with phospho-DICER1. Mechanistically, we identify a chromatin-DICER1 nuclear complex comprised of Mediator complex subunit 12, CBX1, MACROH2A.1 and transcriptional regulators. Together, we propose that phosphorylated-nuclear DICER1 leads to lineage reprogramming of AT2 tumor cells to mediate lung cancer progression. Overall design: Chromatin accessibility across the genome of KrasLA1/+;Dicer1S2D/+ lung tumors was determined by ATAC sequencing.
Sample: Mouse Lung tumor_KrasLA1_695_rep1
SAMN34071636 • SRS17224925 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM7146567
Instrument: NextSeq 500
Strategy: ATAC-seq
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: A total of 40-50 mg of lung tumors were dissected from euthanized mice, snap frozen in liquid nitrogen and submitted for ATAC-sequencing Samples were send to Active Motif for library prep, sequencing and analysis
Runs: 1 run, 42.5M spots, 3.6G bases, 1.2Gb
Run# of Spots# of BasesSizePublished
SRR2406714342,537,4553.6G1.2Gb2023-08-08

ID:
27238814

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