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SRX19631182: GSM7091016: Mouse Liver tumor, Nrf2 KO, AcH3K27, rep1; Mus musculus; ChIP-Seq
1 ILLUMINA (NextSeq 500) run: 74.6M spots, 5.5G bases, 2.4Gb downloads

External Id: GSM7091016_r1
Submitted by: Cancer Center, Augusta University
Study: Nrf2 drives hepatocellular carcinoma progression through acetyl-CoA-mediated metabolic, epigenetic and oncogenic regulatory networks
show Abstracthide Abstract
Liver tumors had high levels of histone acetylation. Nrf2 knockout mice developed fewer tumors than Nrf2 wild-type mice. The mechanistic study found that Nrf2 knockout reduced the generation of acetyl CoA from impaired glycolysis, TCA cycle, and fatty acid metabolism. Acetyl CoA is the substrate for protein acetylation including histone acetylation. Here we determined the genome-wide distribution of AcH3K27. We found that Nrf2 through regulating acetyl CoA production affects histone acetylation (AcH3K27) to modulate the expression of genes, whose products were involved in the glycolysis, TCA cycle, fatty acid metabolism, and oncogenic Myc/mTor signaling. Our findings supported an Nrf2-integrated metabolic, epigenetic and oncogenic signaling in driving liver tumor development. Overall design: Comparison the genome-wide distribution of histone lysine 27 acetylation in liver tumors of Nrf2 WT (2 samples) and Nrf2 KO mice (2 samples) at 36 weeks of age.
Sample: Mouse Liver tumor, Nrf2 KO, AcH3K27, rep1
SAMN33710162 • SRS17000734 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM7091016
Instrument: NextSeq 500
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: Liver tumor tissues were crosslinked with 1% formaldehyde, sonicated, and immunoprecipitated with AcH3K27 antibody. 10 ng ChIP pulldown DNA was prepared for the library using TruSeq ChIP Sample Preparation kit (Illumina). Libraries were amplified using 18 cycles on the thermocycler, followed by size selection at 250-450bp in length using Agencourt AMPure XP beads from Beckman Coulter.
Runs: 1 run, 74.6M spots, 5.5G bases, 2.4Gb
Run# of Spots# of BasesSizePublished
SRR2379909474,591,9045.5G2.4Gb2023-03-20

ID:
26928976

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