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SRX19293583: GSM7029061: Rax-GFP ESCs, H3K27ac antagonist Rep 1; Mus musculus; ChIP-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 52.1M spots, 2.6G bases, 905.2Mb downloads

External Id: GSM7029061_r1
Submitted by: Center for Vascular and Developmental Biology, Northwestern University Feinberg School of Medicine
Study: Lactate-dependent Transcriptional Regulation Controls Mammalian Eye Morphogenesis [H3K27ac ChIP-seq]
show Abstracthide Abstract
Mammalian retinal metabolism favors aerobic glycolysis. However, the role of glycolytic metabolism in retinal morphogenesis remains unknown. We report that aerobic glycolysis is necessary for the early stages of retinal development. Taking advantage of an unbiased approach that combines the use of eye organoids and single-cell RNA sequencing, we identify specific glucose transporters and glycolytic genes in retinal progenitors. Next, we determine that the optic vesicle territory of mouse embryos displays elevated levels of glycolytic activity. At the functional level, we show that removal of Glucose transporter 1 and Lactate dehydrogenase A gene activity from developing retinal progenitors arrests eye morphogenesis. Surprisingly, we uncover that lactate-mediated upregulation of key eye-field transcription factors is controlled by the epigenetic modification of histone H3 acetylation through histone deacetylase activity. Our results identify an unexpected bioenergetic independent role of lactate as a signaling molecule necessary for mammalian eye morphogenesis. Overall design: Comparative histone h3 k27 acetylation (H3K27ac) profiling analysis of ChIP-seq data for the eye organoids and its treatments (control, GNE-140, and GNE-140 with lactate).
Sample: Rax-GFP ESCs, H3K27ac antagonist Rep 1
SAMN33141978 • SRS16694585 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM7029061
Instrument: Illumina HiSeq 4000
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: Cells were fixed with 1% formaldehyde for 10 minutes. After quenching and cell lysis, chromatin was sonicated using a E220 focused-ultrasonicator (Covaris). ChIP-seq libraries were prepared for sequencing using standard Illumina protocols
Runs: 1 run, 52.1M spots, 2.6G bases, 905.2Mb
Run# of Spots# of BasesSizePublished
SRR2335205752,087,3792.6G905.2Mb2023-06-07

ID:
26530371

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