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SRX18840748: GSM6893383: FGF19 treated APOB-/- organoids from donor 2; Homo sapiens; RNA-Seq
2 ILLUMINA (NextSeq 2000) runs: 32M spots, 3.2G bases, 1,023.9Mb downloads

External Id: GSM6893383_r1
Submitted by: Hubrecht Institute
Study: Transcriptomic characterization of control and drug-treated APOB-mutant organoids to study steatosis-resolving drug effects
show Abstracthide Abstract
We treated APOB-mutant organoids with different anti-NAFLD drug candidates that were effective at resolving steatosis. To understand the mechanisms of drug action and adverse drug effects we performed bulk RNA-sequencing on drug-treated and vehicle-treated APOB mutant organoids. Overall design: APOB-mutant organoids, 2 clonal lines from 2 different donors, were treated with the respective drug (ACCi, FASi, DGAT2i, FXRa, or hFGF19) or vehicle (control) for 7 days. Thereafter, organoids were harvested for RNA extraction.
Sample: FGF19 treated APOB-/- organoids from donor 2
SAMN32389080 • SRS16272430 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM6893383
Instrument: NextSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: total RNA was isolated using TRIzol Reagent (Thermo Fisher) RNA libraries were prepared using TruSeq Stranded mRNA polyA kit (Illumina)
Runs: 2 runs, 32M spots, 3.2G bases, 1,023.9Mb
Run# of Spots# of BasesSizePublished
SRR2288235915,993,8141.6G515.1Mb2023-02-23
SRR2288236015,991,4131.6G508.9Mb2023-02-23

ID:
25934795

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