U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX18840744: GSM6893379: ACCi treated APOB-/- organoids from donor 2; Homo sapiens; RNA-Seq
2 ILLUMINA (NextSeq 2000) runs: 32.6M spots, 3.3G bases, 1Gb downloads

External Id: GSM6893379_r1
Submitted by: Hubrecht Institute
Study: Transcriptomic characterization of control and drug-treated APOB-mutant organoids to study steatosis-resolving drug effects
show Abstracthide Abstract
We treated APOB-mutant organoids with different anti-NAFLD drug candidates that were effective at resolving steatosis. To understand the mechanisms of drug action and adverse drug effects we performed bulk RNA-sequencing on drug-treated and vehicle-treated APOB mutant organoids. Overall design: APOB-mutant organoids, 2 clonal lines from 2 different donors, were treated with the respective drug (ACCi, FASi, DGAT2i, FXRa, or hFGF19) or vehicle (control) for 7 days. Thereafter, organoids were harvested for RNA extraction.
Sample: ACCi treated APOB-/- organoids from donor 2
SAMN32389084 • SRS16272426 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM6893379
Instrument: NextSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: total RNA was isolated using TRIzol Reagent (Thermo Fisher) RNA libraries were prepared using TruSeq Stranded mRNA polyA kit (Illumina)
Runs: 2 runs, 32.6M spots, 3.3G bases, 1Gb
Run# of Spots# of BasesSizePublished
SRR2288236716,309,4921.6G525.7Mb2023-02-23
SRR2288236816,282,5951.6G518.6Mb2023-02-23

ID:
25934791

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...