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SRX18366914: GSM6754175: Biol rep 1 - GFP-HI; Sus scrofa; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 116.1M spots, 17.4G bases, 5.4Gb downloads

External Id: GSM6754175_r1
Submitted by: Piedrahita Lab, North Carolina State University
Study: Transgenic porcine model reveals two roles for LGR5 during lung development and homeostasis [Bulk RNA-seq]
show Abstracthide Abstract
Stem cell dynamics in the lung govern homeostasis, repair, and regeneration, yet there is still much unknown about the mechanisms of these processes. Furthermore, incongruencies between murine and human physiology limit the translation of some findings. In this work, we address these limitations by using a transgenic pig model to identify two populations of LGR5+ cells in the lung that are present in the human but that are absent from the mouse. Using RNA sequencing, 3D imaging, organoid models, and differentiation assays, we determine that in the fetal lung, epithelial LGR5 expression is transient in a subpopulation of developing lung bud tips. While epithelial LGR5 expression is absent from postnatal lung, it is reactivated in some organoids derived from basal airway cells. A separate population of LGR5+ cells is mesenchymal, surrounds developing and mature airways, is closely associated with nerve fibers, and acts as a multipotent progenitor cell capable of supporting the airway basal cell niche. These results point to two roles for LGR5 in orchestrating stem and progenitor cell dynamics, and provide a physiologically relevant model for further studies on the role of these populations in repair and regeneration. Overall design: RNA-Seq
Sample: Biol rep 1 - GFP-HI
SAMN31853101 • SRS15853347 • All experiments • All runs
Organism: Sus scrofa
Library:
Name: GSM6754175
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Cells were isolated from lungs of adult or fetal LGR5 pigs. 2-3 cm2 pieces of lung were collected in cold PBS and moved into a sterile hood. Lung tissue was then minced using scissors or razor blade and then washed twice with cold PBS to remove blood and immune cells. Minced tissues were then incubated for 1 hour in a roller incubator at 37℃ in an enzymatic digest buffer containing 10 mg/mL Dispase (Invitrogen), 2 mg/mL DNase I (STEMCELL Technologies), and 5mg/mL (adult) or 2mg/mL (fetal) Collagenase Type II (Sigma). The digestion mixture was then strained using a 70 μM cell strainer and washed with a wash buffer (PBS, 5% FBS, 1% antibiotic-antimycotic) and centrifuged. For adult tissue, pellets were incubated in Red Blood Cell Lysis Buffer (Invitrogen) for 10 minutes at room temperature with gentle agitation. For fluorescent activated cell sorting, cells from porcine lung or dissociated organoids were suspended in MACS buffer (Miltenyi) and incubated with 10μl/ml anti-EpCAM-APC (Thermo Scientific, 17-5791-83) and/or anti-NGFR-PE (eBioscience, 12-9400-41). Propidium iodide was added for dead cell exclusion immediately before fluorescence activated cell sorting (Beckman Coulter MoFlo XPD). Illumina Nextera XT library was used for sequencing library preparation.
Runs: 1 run, 116.1M spots, 17.4G bases, 5.4Gb
Run# of Spots# of BasesSizePublished
SRR22396970116,082,44617.4G5.4Gb2023-11-15

ID:
25381509

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