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SRX1832194: GSM2194344: ACAP236 22233; Homo sapiens; RNA-Seq
2 ILLUMINA (Illumina HiSeq 2500) runs: 2.3M spots, 227.9M bases, 112.5Mb downloads

Submitted by: NCBI (GEO)
Study: Single cell RNA-seq of human pancreatic endocrine cells from Juvenile, adult control and type 2 diabetic donors.
show Abstracthide Abstract
We successfully sequenced and annotated more than 400 cells from child, adult control, type 1 diabetes and type 2 diabetes donors. We detect donor-type specific transcript variation. We also report that cells from child donors have less defined gene signature. Cells from type 2 diabetes donors resemble juvenile cells in gene expression. Overall design: Cells from three adult controls (56, 74, 92), one donor with type 1 diabetes (91), two donors with type 2 diabetes (75, 143), and two child donors (40, 72) were sequenced. Numbers in parathesis indicates number of cells sequenced.
Sample: ACAP236 22233
SAMN05217335 • SRS1493272 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Islets were dissociated to single cell by 0.05% Trypsin, 9 mins at 37oC. Cells (250-500 cells/μl) were subsequently loaded on Fluidigm C1 IFC with either 5-10 μM or 10-17 μM capture size. Smarter-seq V2 kit was utilized for library construction per manufacturer's protocol to generate cDNA. Prepration of Illumina libraries from cDNA was done with the NexteraXT kit per Fluidigm’s instructions.
Experiment attributes:
GEO Accession: GSM2194344
Links:
Runs: 2 runs, 2.3M spots, 227.9M bases, 112.5Mb
Run# of Spots# of BasesSizePublished
SRR36501171,117,931111.8M60.1Mb2016-07-05
SRR36501181,161,020116.1M52.5Mb2016-07-05

ID:
2616727

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