U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX1823810: GSM2188503: DIF_CEBPb_B; Homo sapiens; ChIP-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 22.4M spots, 1.1G bases, 683.9Mb downloads

Submitted by: NCBI (GEO)
Study: BRD4 localization to lineage-specific enhancers is associated with a distinct transcription factor repertoire [ChIP-Seq]
show Abstracthide Abstract
We examined context specific function of BRD4 in promoting lineage specific gene expression and show that BRD4 is essential for osteoblast differentiation. Overall design: We performed ChIP-sequencing from hFOB cells (undifferentiated and differentiated for 5 days into osteoblastic lineage) . We generated BRD4 and RNA POLII ChIP-Seq data from undifferentiated and differentiated cells; H3K27ac, H3K27me3 and H2Bub1 ChIP-Seq data from undifferentiated and differentiated cells with DMSO or JQ1 treatment. Consistently, Input DNA from all the three conditions was included as well. C/EBPb, TEAD1, FOSL2, JUND and STAT3 ChIP-Seq was performed in differentiated hFOBs . We performed ChIP-sequencing from L3.6 cells. We generated BRD4 ChIP-Seq data.
Sample: DIF_CEBPb_B
SAMN05210120 • SRS1486841 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2000
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: The ChIP was performed with 20 min crosslinking in 1 % formaldehyde in PBS. Following chromatin shearing , 1-2µg antibody was used for immunoprecipitation overnight. The immunocomplexes were incubated 2 additional hours with protein A sepharose beads and subjected to washes. After reversing the cross-linking, the DNA was isolated by standart phenol-chloroform-isoamyl extraction procedure. ChIP-Seq libraries were prepared with MicroPlex Library Preparation Kit following the manufacturer's instructions.
Experiment attributes:
GEO Accession: GSM2188503
Links:
Runs: 1 run, 22.4M spots, 1.1G bases, 683.9Mb
Run# of Spots# of BasesSizePublished
SRR363204222,353,5221.1G683.9Mb2016-10-04

ID:
2606585

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...