GSM2179013: C51singledeltash4minus; Homo sapiens; RNA-Seq - SRA

SRX1808075: GSM2179013: C51singledeltash4minus; Homo sapiens; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 55M spots, 8.4G bases, 3.4Gb downloads

Submitted by: NCBI (GEO)

Study: Effect of SF3B1 suppression in cancer cells with different SF3B1 copy-number levels

PRJNA323711 • SRP075880 • All experiments • All runs

show Abstracthide Abstract

Breast cancer cell lines containing stable dox inducible shRNAs targeting SF3B1 were profiled by RNA sequencing. We determined the effect of gene expression and splicing changes before and after knocking down SF3B1 in cell lines with normal copy number (SF3B1neutral) or partial copy loss (SF3B1loss) cell lines Overall design: RNA profiles for SF3B1 suppression were generated from 8 breast cancer cell line pairs (-/+ dox) with no techincal replicates.

Sample: C51singledeltash4minus

SAMN05187211 • SRS1472946 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: NextSeq 500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: Qiangen RNA easy extraction kit RNA libraries were prepared for sequencing using standard Illumina protocols

Experiment attributes:

GEO Accession: GSM2179013

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 55M spots, 8.4G bases, 3.4Gb

Run	# of Spots	# of Bases	Size	Published
SRR3605496	55,022,916	8.4G	3.4Gb	2017-02-07

ID:: 2584230

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Sequence Read Archive

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