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SRX1802835: GSM2178978: LMP2_CD8ab_rep1; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 3000) run: 70.6M spots, 15.9G bases, 4.2Gb downloads

Submitted by: NCBI (GEO)
Study: Gene expression profile of regenerated CD8aa T cells and CD8aß T cells from LMP2 T-iPSCs
show Abstracthide Abstract
Whereas cytotoxic T lymphocytes (CTLs) represent the most promising therapeutic avenue in cancer immunotherapy, adaptive transfer of antigen-specific CTLs has faced difficulty in efficient expansion of CTLs from patients in ex vivo culture. To solve this issue, several groups have proposed that the induced pluripotent stem cell (iPSC) technology can be applied for the expansion of antigen-specific CTLs: when iPSCs are produced from antigen-specific CTLs and CTLs are induced from these iPSCs, all regenerated CTLs express the same TCR as original CTLs. However, in these previous studies, one critical issue remains to be solved. With current methods, the regenerated CTLs are mostly of the CD8aa+ innate type and have less antigen-specific cytotoxic activity than primary CTLs. Here we report that, by stimulating purified iPSC-derived CD4/CD8 double positive (DP) cells with anti-CD3 antibody, T cells expressing CD8aß were generated and they had cytotoxic activity comparable to primary CTLs. Overall design: mRNA profiles of regenerated CD8aa T cells and CD8aß T cells from LMP2 T-iPSCs and CD8aa T cells, CD8aß T cells and ?d T cells from peripheral blood were generated by deep sequencing, in triplicate, using Illumina HiSeq 3000/HiSeq 4000.
Sample: LMP2_CD8ab_rep1
SAMN05180910 • SRS1469158 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 3000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was isolated using an RNeasy Plus Mini Kit (QIAGEN) Libraries for RNA-sequence were prepared using NEBNext Ultra RNA Library Prep Kit for Illumina (New England Biolabs).
Experiment attributes:
GEO Accession: GSM2178978
Links:
Runs: 1 run, 70.6M spots, 15.9G bases, 4.2Gb
Run# of Spots# of BasesSizePublished
SRR359320670,646,80315.9G4.2Gb2016-11-15

ID:
2578533

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