GSM6680981: Microbiota of Stool from patient HPV-9; Homo sapiens; OTH... - SRA

SRX18027152: GSM6680981: Microbiota of Stool from patient HPV-9; Homo sapiens; OTHER
1 ILLUMINA (Illumina MiSeq) run: 151,086 spots, 89.4M bases, 51.3Mb downloads

External Id: GSM6680981_r1

Submitted by: Experimental and Clinical Biomedical Sciences, University of Florence

Study: Comparing the microbiota composition between HPV positive and negative patients with CRC

PRJNA894473 • SRP404595 • All experiments • All runs

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Total DNA was extracted from the stool of the patients, amplified to collect amplicons of variable V3–V4 regions (primers 341F and 805R) of the bacterial 16s rRNA gene and sequenced with MiSeq (2x300bp) Illumina platform. Overall design: Total DNA was extracted from the stool of the patients, amplified to collect amplicons of variable V3–V4 regions (primers 341F and 805R) of the bacterial 16s rRNA gene and sequenced with MiSeq (2x300bp) Illumina platform.

Sample: Microbiota of Stool from patient HPV-9

SAMN31456018 • SRS15534301 • All experiments • All runs

Organism: Homo sapiens

Library:

Name: GSM6680981

Instrument: Illumina MiSeq

Strategy: OTHER

Source: GENOMIC

Selection: other

Layout: PAIRED

Construction protocol: Genomic DNA was extracted using the DNeasy PowerSoil Pro Kit (Qiagen, Hilden, Germany) Illumina 16S Metagenomic Sequencing Library Preparation protocol ( see https://emea.support.illumina.com) paired-end (2x300) amplicon sequencing

Runs: 1 run, 151,086 spots, 89.4M bases, 51.3Mb

Run	# of Spots	# of Bases	Size	Published
SRR22046011	151,086	89.4M	51.3Mb	2023-10-17

ID:: 24983465

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