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SRX17956885: GSM6658959: CD8_Spleen_CSF1R; Mus musculus; OTHER
1 ILLUMINA (Illumina MiSeq) run: 6.4M spots, 3.2G bases, 1.8Gb downloads

External Id: GSM6658959_r1
Submitted by: National Yang Ming Chiao Tung University
Study: A CSF-1R-blocking antibody/IL-10 fusion protein increases anti-tumor immunity by effectuating tumor-resident CD8+ T cells
show Abstracthide Abstract
To investigate the in vivo effect of the fusion protein and its subcomponents on T cell function, CD8 T cells of the indicated treament were isolated from tumor, spleen and lympho nodes (LN) for T cell receptor sequencing assay. Overall design: Total RNAs were extracted form CD8 T cells form tumor, spleen and LN, follwed by constructing RNA sequencing libraries with the same amount RNA (100ng, RIN >8) using QIAseq mouse TCR Sequencing kit (#333705) TCR libraries were sequenced using an Illumina NextSeq 550 system for CDR3 region. The TCR repertoire analysis were processed by QIAseq Immune Repertoire RNA Library Kit Data Analysis Portal. Each sequencing sampele was mixed sample from same treatment (N=3); Total 12 samples from 4 treatment groups and 3 different tissues
Sample: CD8_Spleen_CSF1R
SAMN31367965 • SRS15473964 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM6658959
Instrument: Illumina MiSeq
Strategy: OTHER
Source: TRANSCRIPTOMIC
Selection: other
Layout: PAIRED
Construction protocol: Trizol protocol for tissue RNA extraction. Extracted RNA were quantificated by using Qubit fluorometer with Qubit RNA BR Assay Kit Libraries were prepared using QIAseq Immune Repertoire RNA Library Kit (GeneGlobe configuration no. IMMM-001Z-12) following the directions of the manufacturer. QIASeqTargeted enrichment & sequencing
Runs: 1 run, 6.4M spots, 3.2G bases, 1.8Gb
Run# of Spots# of BasesSizePublished
SRR219734536,379,1913.2G1.8Gb2023-07-09

ID:
24899874

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