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SRX1787038: GSM2171433: RNA-seq for BRD4 knockdown cells; Homo sapiens; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 14.1M spots, 2.1G bases, 895.9Mb downloads

Submitted by: NCBI (GEO)
Study: Epigenetic targeting of immunocheckpoint PD-L1 by BET bromodomain inhibition
show Abstracthide Abstract
Epigenetic regulators have emerged as exciting targets for cancer therapy. Additionally, restoration of antitumor immunity by blocking the PD-L1 signaling using antibodies has proven to be beneficial in cancer therapy. Here we show that BET bromodomain inhibition suppresses PD-L1 expression and restores antitumor immunity in ovarian cancer. CD274 (encoding PD-L1) is a direct target of BRD4-mediated gene transcription. In mouse models, treatment with the BET inhibitor JQ1 significantly reduced PD-L1 expression on tumor cells and tumor-associated dendritic cells and macrophages, which correlated with an increase in the activity of antitumor cytotoxic T cells. Together, these data demonstrate an epigenetic approach to block PD-L1 signaling to restore antitumor immunity. Given the fact that BET inhibitors have been proven safe with manageable reversible toxicity in clinical trials, our findings indicate that pharmacological BET inhibitors represent a novel treatment strategy for targeting PD-L1 expression. Overall design: RNA-seq for JQ1 treated and shBRD4 knockdown cells with controls
Sample: RNA-seq for BRD4 knockdown cells
SAMN05157064 • SRS1457976 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted using Trizol The sequencing libraries were generated using the Lexogen QuantSeq 3’ mRNA sequencing library preparation kit (SKU:015.24) for Illumina sequencing platform compatible libraries. All 12 libraries were pooled in equal molar amounts and run on the Illumina Nextseq500 using the Mid Output V2 (150 cycles) kit (cat # FC-404-2001)
Experiment attributes:
GEO Accession: GSM2171433
Links:
Runs: 1 run, 14.1M spots, 2.1G bases, 895.9Mb
Run# of Spots# of BasesSizePublished
SRR356031414,067,2742.1G895.9Mb2016-10-17

ID:
2559454

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