GSM6560599: Matched healthy tissue sample of male patient 5; Homo sap... - SRA

SRX17487052: GSM6560599: Matched healthy tissue sample of male patient 5; Homo sapiens; OTHER
1 ILLUMINA (Illumina MiSeq) run: 111,224 spots, 66.7M bases, 36.3Mb downloads

External Id: GSM6560599_r1

Submitted by: Experimental and Clinical Biomedical Sciences, University of Florence

Study: Analysis of microbiota composition within breast tumor and healthy breast tissues in males and females

PRJNA877831 • SRP396193 • All experiments • All runs

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Total DNA was extracted from FFPE specimens of breast tumor and surrounding healthy tissue, amplified to collect amplicons of variable V3–V4 regions of the bacterial 16s rRNA gene and sequenced with MiSeq (2x300bp) Illumina platform. Overall design: Differential analysis of microbial abundance at different taxonomic ranks

Sample: Matched healthy tissue sample of male patient 5

SAMN30724394 • SRS15039618 • All experiments • All runs

Organism: Homo sapiens

Library:

Name: GSM6560599

Instrument: Illumina MiSeq

Strategy: OTHER

Source: GENOMIC

Selection: other

Layout: PAIRED

Construction protocol: Genomic DNA was extracted using the DNeasy PowerSoil Pro Kit (Qiagen, Hilden, Germany) Illumina 16S Metagenomic Sequencing Library Preparation protocol ( see https://emea.support.illumina.com) paired-end (2x300) amplicon sequencing

Runs: 1 run, 111,224 spots, 66.7M bases, 36.3Mb

Run	# of Spots	# of Bases	Size	Published
SRR21483384	111,224	66.7M	36.3Mb	2023-06-14

ID:: 24322080

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