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SRX1736295: GSM2137738: CCR6+Foxp3EGFP+ Il4raR576 Treg 3; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 3000) run: 50.7M spots, 2.6G bases, 2.1Gb downloads

Submitted by: NCBI (GEO)
Study: A Pro-Asthmatic IL-4 Receptor Allele Promotes Airway Inflammation by Programming TH17 Cell-Like Regulatory T cells
show Abstracthide Abstract
Mechanisms by which regulatory T (Treg) cells fail to control inflammation in asthma remain poorly understood. We show that a severe asthma-associated polymorphism in the interleukin-4 receptor alpha chain (IL-4Ra-R576) biases induced Treg (iTreg) cells towards a T helper 17 (TH17) cell fate. This skewing reflects the recruitment by IL-4Ra-R576 of the adaptor protein growth factor receptor-bound protein 2 (GRB2), which drives IL-17 expression by an extracellular signal-regulated kinase-, IL-6- and STAT3-dependent mechanism. We showed that the IL-4Ra-R576 mutation elicits TH17 airway responses in vivo, in a house dust mite (HDM)- or ovalbumin (OVA)-driven model of airway inflammation in the mice carry the IL-4Ra-R576 mutation (Il4raR576 mice). Treg cell-specific deletion of genes encoding IL-6Ra or the master TH17 cell regulator Retinoid-related Orphan Receptor ?t (ROR?t), but not IL-4 and IL-13, protected mice against exacerbated airway inflammation induced by IL-4Ra--576. Analysis of lung tissue Treg cells revealed that the expression of IL-17 and the TH17 cell-associated chemokine receptor CCR6 was largely overlapping and highly enriched in Treg and conventional T (Tconv) cells of allergen-treated Il4raR576 mice. To further characterize the subset of IL-17 producing Foxp3+ Treg in the lung of OVA-treated mice we utilized CCR6 as a marker of Treg cells committed towards the TH17 cell lineage to examine their functional, epigenetic and transcriptional profiles. CCR6+Foxp3EGFP+ Treg cells isolated from OVA-sensitized and challenged Il4raR576 mice, by FACS (Fluorescence Activated Cell Sorting) exhibited decreased methylation of the Foxp3 CNS2 locus comparing to CCR6–Foxp3EGFP+ Treg cells from same animals, indicative of decreased stability. They also exhibited profoundly decreased suppressive function as compared to CCR6– WT and CCR6– Il4raR576 counterparts. Transcriptional profiling of CCR6+Foxp3EGFP+ Treg cells revealed increased relative expression in CCR6+ Il4raR576 Treg cells of genes associated with a TH17 cell signature, including Rorc, Ccr6, Il23r, Il17a, Il17f, Il1r1, Nr1d1, Cstl, and Ahr comparing to CCR6–Foxp3EGFP+ Treg cells from same animals. Overall design: Three CCR6+Foxp3EGFP+ Il4raR576 replicates and four CCR6–Foxp3EGFP+ Il4raR576 Treg replicates (controls) were sampled
Sample: CCR6+Foxp3EGFP+ Il4raR576 Treg 3
SAMN04914165 • SRS1417066 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 3000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: We purified CCR6+Foxp3EGFP+ Il4raR576 and CCR6–Foxp3EGFP+ Il4raR576 Treg cells from total lung digests of OVA-sensitized and challenged mice, using FACS (Fluorescence Activated Cell Sorting). RNA was first converted to cDNA using ClonetechÕs SMART-Seq v4 Ultra Low Input RNA kit following standard procedure. After cDNA was measured with Nanodrop, 250 ng in a 50 ul volume was then fragmented to 200-300 bp size using the Covaris M220. All the fragmented DNA was then used with the KAPA Hyper Prep Kit (Illumina platform) to make cDNA libraries. Libraries were quantified using HS DNA Qubit and Agilent HS DNA Bioanalyzer.
Experiment attributes:
GEO Accession: GSM2137738
Links:
Runs: 1 run, 50.7M spots, 2.6G bases, 2.1Gb
Run# of Spots# of BasesSizePublished
SRR346644550,700,7172.6G2.1Gb2016-07-25

ID:
2485400

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