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SRX17314007: GSM6519854: Neurons D868D RNA #2; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 58.8M spots, 17.6G bases, 5.3Gb downloads

External Id: GSM6519854_r1
Submitted by: Gastroenterology, Ospedale San Raffaele
Study: Balanced SET levels favor the correct enhancer repertoire during cell fate acquisition
show Abstracthide Abstract
To understand the effect of SET protein accumulation on genomic function we used different accumulating models, cells and in vivo, that we analyzed with different techinques up to the single level. SET accumulation is known to be caused by the accumulation of its direct interactor SETBP1, when mutated, the causative gene of Schinzel Giedion syndrome. SET has been shown to be able to interfere with histones acetylation, thus we wanted to investigated the functional effect on the genome function and cell fate commitment. Overall design: Genomic analysis of human cells (IPSCs, NPCs, Neurons), Zebrafish brain embryo, mouse embryonic and post natal cortex, to understand the effect of SET accumulation on genome function
Sample: Neurons D868D RNA #2
SAMN30566511 • SRS14875566 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM6519854
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was extracted using the TRI Reagent isolation system (Sigma-Aldrich) according to the manufacturer's instructions. TruSeq
Runs: 1 run, 58.8M spots, 17.6G bases, 5.3Gb
Run# of Spots# of BasesSizePublished
SRR2130738158,818,66617.6G5.3Gb2022-09-12

ID:
24134809

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