GSM6435504: MEFs,Ptenα-/-,VSV 8h,rep 2; Mus musculus; RNA-Seq - SRA

SRX16974293: GSM6435504: MEFs,Ptenα-/-,VSV 8h,rep 2; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 23.1M spots, 6.9G bases, 2.3Gb downloads

External Id: GSM6435504_r1

Submitted by: Peking University Health Science Center

Study: RNA-seq of wild-type and Ptena-/- MEFs under VSV infection

PRJNA867141 • SRP390375 • All experiments • All runs

show Abstracthide Abstract

To explore the effect of Ptena on antiviral immunity pathway, we conducted RNA transcriptome profiling of wild-type and Ptena-/- MEFs (mouse embryonic fibroblast cells) in response to VSV (vesicular stomatitis virus) Overall design: We infected wild-type and Ptena-/- MEFs with VSV for eight hours and perform RNA sequecing

Sample: MEFs,Ptenα-/-,VSV 8h,rep 2

SAMN30185054 • SRS14561149 • All experiments • All runs

Organism: Mus musculus

Library:

Name: GSM6435504

Instrument: Illumina NovaSeq 6000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: RNA was purified using Trizol reagent and the integrity was assessed by the RNA Nano 6000 Assay Kit of the Bioanalyzer 2100 system The trancriptome libraries were prepared using Illumina TruSeq RNA Sample Prep Kit (Cat#FC-122-1001) and sequenced by the Illumina NovaSeq 6000

Runs: 1 run, 23.1M spots, 6.9G bases, 2.3Gb

Run	# of Spots	# of Bases	Size	Published
SRR20955701	23,130,893	6.9G	2.3Gb	2024-02-20

ID:: 23751359

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