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SRX16046579: GSM6303857: R597-2-245-T4 ; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 56.4M spots, 8.6G bases, 3Gb downloads

External Id: GSM6303857_r1
Submitted by: Genetics, The University of Texas MD Anderson Cancer Center
Study: Omics analyses of a somatic Trp53R245W/+ breast cancer model identify cooperating driver events activating PI3K/Akt/mTOR signaling
show Abstracthide Abstract
Alterations of the tumor suppressor TP53, one of the most common events in cancer, alone are insufficient for tumor development but serve as drivers of transformation. We sought to identify cooperating events through genomic analyses of a novel somatic Trp53R245W mouse model (equivalent to the TP53R248W hot spot mutation in human cancers) that recapitulates metastatic breast cancer development. We identified cooperating lesions similar to those found in human breast cancers. Moreover, we identified activation of the Pi3k/Akt/mTOR pathway in most tumors via mutations in Pten, Erbb2, Kras and/or a recurrent Pip5k1c mutation that stabilizes the Pip5k1c protein to activate Pi3k/Akt/mTOR signaling. Another PIP5K1C family member, PIP5K1A, is co-amplified with PI4KB in 18% of human breast cancer patients and both encode kinases that are responsible for production of the PI3K substrate, phosphatidylinositol 4,5-bisphosphate. Thus, the TP53R248W mutation and PI3K/Akt/mTOR signaling are major cooperative events driving breast cancer development. Additionally, we demonstrated that the upregulation of oxidative phosphorylation by Pi3k/Akt/mTOR signaling is a vulnerability in murine as well as human breast cancer cell lines. These findings advance our understanding of mutant p53-driven breast tumors and expand testable targets for breast cancer treatment. Overall design: Comparative gene expression profiling analysis of RNA-seq data for mouse breast tumors driven by somatic Trp53R245W and enriched epithelia isolated from mammary glands of mice in the same cohort
Sample: R597-2-245-T4
SAMN29543218 • SRS13726221 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM6303857
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was harvested using RNeasy mini kit (Qiagen). RNA libraries for RNA-seq were prepared using TruSeq stranded protocol.
Runs: 1 run, 56.4M spots, 8.6G bases, 3Gb
Run# of Spots# of BasesSizePublished
SRR2000574756,428,8958.6G3Gb2022-10-01

ID:
22725454

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