U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX15967398: GSM6285130: CSBSD, 26; Mus musculus; RNA-Seq
1 BGISEQ (BGISEQ-500) run: 36.5M spots, 7.3G bases, 4.6Gb downloads

External Id: GSM6285130_r1
Submitted by: University of Copenhagen
Study: INDYCSB
show Abstracthide Abstract
There is currently no established treatment for Cockayne syndrome, a disease characterized by progressive early onset neurodegeneration with features of premature aging and death in childhood. Here, we tested if acetyl-CoA precursors, citrate and beta-hydroxybutyrate, could reduce features of Cockayne syndrome. We identified the gene Helicase 89B (Hel89B) as a homologue of CSB in drosophila and found that the ketone beta-hydroxybutyrate rescued features of premature aging in Hel89B deficient flies. In mammals, loss of the citrate carrier Indy exacerbated the phenotype of Csbm/m mice, rescued by a ketogenic diet. The rescue effect appeared to be mediated through ketone stimulated histone acetylation and facilitation of transcriptional resolution of non-B DNA. Notably, this appears to be a common effect of a ketogenic diet. Overall design: Examination of transcriptome in cerebella of WT, INDY, CSB and DKO mice, fed standard diet (SD) or ketogenic diet (KD).
Sample: CSBSD, 26
SAMN29473251 • SRS13653695 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM6285130
Instrument: BGISEQ-500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA extraction with trizol-chloroform Total RNA, rRNA depleted libraries were prepared using the DNBseq protocol from BGI.
Runs: 1 run, 36.5M spots, 7.3G bases, 4.6Gb
Run# of Spots# of BasesSizePublished
SRR1992488736,461,2747.3G4.6Gb2024-06-07

ID:
22643224

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...