U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX1590747: GSM2065476: p53-KO-F8-1-C35_S51; Mus musculus; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 6.8M spots, 507.5M bases, 192.7Mb downloads

Submitted by: NCBI (GEO)
Study: p53 is a critical regulator of airway epithelial progenitor cell homeostasis.
show Abstracthide Abstract
How progenitor cells regulate quiescence and differentiation is poorly understood. Here, we demonstrate that the tumor suppressor p53 regulates both proliferation and differentiation of club progenitor cells in the airway epithelium. We show that p53 loss decreases ciliated cell differentiation and increases the proliferative capacity of club progenitors, increasing epithelial cell density. p53 deficient progenitors generated a pseudostratified epithelium containing basal-like cells in vitro and contained an increased proportion of BASCs in vivo, suggesting that p53 suppresses multipotency during homeostasis. Conversely, an additional copy of p53 decreases proliferation and increases ciliated cell differentiation. Using single cell RNA-Seq, we expose heterogeneity within airway epithelial progenitor cells and found that cell cycle regulators, particularly p21, are altered following p53 loss. Together, these findings reveal an essential role for p53 in regulating progenitor cell behavior, which has broad implications in understanding both stem cell and cancer biology Overall design: Examination of progenitor cell behavior in p53 knock out and wild type
Sample: p53-KO-F8-1-C35_S51
SAMN04502784 • SRS1303523 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Cell capture, lysis, reverse transcription and cDNA amplification was performed on the C1 IFC for mRNA-seq on Fluidigm C1 Single-Cell Auto Prep System following the manufacturer’s protocol. Medium sized C1 mRNA-Seq chips were used to capture each cell-cycle fraction. The C1 Auto-prep system captured the dissociated single cells across 96 wells and performed cell lysis, cDNA synthesis with reverse transcription and PCR reaction using the SMARTer Ultra Low Input RNA Kit. Cells captured across the 96 wells are manually inspected as a quality control measure to remove empty well, doublets or debris containing wells. 92 ERCC spike-ins of known concentration were added during the lysis step to assess and quantify technical variation. cDNA from several representative cells were checked by High Sensitivity DNA chips using Fragment Analyzer (Advanced Analytical). Libraries for each of the 96 captured cells were prepared using the Illumina Nextera XT DNA sample preparation kit with 96 dual barcoded indices. Single cell libraries were multiplexed and sequenced across 4 lanes of a NextSeq 500 platform (Illumina) using 75 single-end sequencing. On average, about 6-7 million reads would be generated from each single cell library.
Experiment attributes:
GEO Accession: GSM2065476
Links:
Runs: 1 run, 6.8M spots, 507.5M bases, 192.7Mb
Run# of Spots# of BasesSizePublished
SRR31764066,795,048507.5M192.7Mb2016-11-22

ID:
2245269

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...