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SRX15849303: GSM6263885: HAS_Not-injected-1; Gallus gallus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 12.2M spots, 1.5G bases, 648.2Mb downloads

External Id: GSM6263885_r1
Submitted by: Poultry Genomics, Prestage Dept of Poultry Science, NC State University
Study: Comparative RNA sequencing of the jejuna of two lines of chickens divergently selected for antibody response to sheep red blood cells, with and without antigen exposure
show Abstracthide Abstract
Two lines of White Leghorn chickens have been continuously divergently selected for high (HAS) or low (LAS) 5 day post injection antibody titer to injection with sheep red blood cells (SRBC) for over 40 generations. Much remains to be understood about their antibody response phenotypes, therfore we chose to sequence the transcriptomes of the jejunum from individuals of the two lines which had (HASI/LASI) and had not (HASN/LASN) been injected with SRBC to examine differences in gene expression related to divergent selection and antibody response. Overall design: Investigate differential jejunum gene expression from 24 chickens total: 6 each HASN, LASN, HASI, and LASI, to compare differences between lines with regard to genetic selection (HAS vs LAS) and within lines in response to antigen exposure (I vs N)
Sample: HAS_Not-injected-1
SAMN29267176 • SRS13539783 • All experiments • All runs
Organism: Gallus gallus
Library:
Name: GSM6263885
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA was isolated from each jejunum sample using the RNEasy mini kit (Qiagen, Hilden, Germany) following manufacturer protocol Illumina RNA libraries were constructed following manufacturer protocol
Runs: 1 run, 12.2M spots, 1.5G bases, 648.2Mb
Run# of Spots# of BasesSizePublished
SRR1980543512,226,0381.5G648.2Mb2023-06-07

ID:
22508219

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