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SRX15783098: GSM6252826: Tumor, Control, mRNA-derived cDNA; Mus musculus; RNA-Seq
2 ILLUMINA (Illumina NovaSeq 6000) runs: 194.2M spots, 26.4G bases, 7.7Gb downloads

External Id: GSM6252826_r1
Submitted by: Department of Chemistry, University of Chicago
Study: YTHDF2 inhibition potentiates radiotherapy by reprogramming suppressive myeloid cells [CITE-Seq]
show Abstracthide Abstract
RNA N6-methyladenosine (m6A) modification is implicated in cancer progression. However, the impact of m6A on the antitumor effects of radiotherapy and the related mechanisms are unknown. Here we show that ionizing radiation (IR) induces immunosuppressive myeloid-derived suppressor cell (MDSC) expansion and YTHDF2 expression in both murine models and humans. Following IR, loss of Ythdf2 in myeloid cells augments antitumor immunity and overcomes tumor radioresistance by altering MDSC differentiation and inhibiting MDSC infiltration and suppressive function. The remodeling of the landscape of MDSC populations by local IR is reversed by Ythdf2 deficiency. IR-induced YTHDF2 expression relies on NF-?B signaling; YTHDF2 in turn leads to NF-?B activation by directly binding and degrading transcripts encoding negative regulators of NF-?B signaling, resulting in an IR-YTHDF2-NF-?B circuit. Pharmacological inhibition of YTHDF2 overcomes MDSC-induced immunosuppression and improves combined IR and/or anti-PD-L1 treatment. Thus, YTHDF2 is a promising target to improve radiotherapy (RT) and RT/immunotherapy combinations. Overall design: CD45+CD11b+Ly6Chi were sorted from MC38 tumors or blood of MC38 tumor-bearing mice and analyzed using scRNA-seq.
Sample: Tumor, Control, mRNA-derived cDNA
SAMN29180201 • SRS13476254 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM6252826
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC SINGLE CELL
Selection: cDNA
Layout: PAIRED
Construction protocol: first use totalseq B for hashtagging, then use a Takara iCell 8 and a MissionBio Tapestri The libraries were performed using Chromium Next GEM Single Cell 3' GEM, Library & Gel Bead Kit v3.1 CITE-seq (Cellular Indexing of Transcriptomes and Epitopes by sequencing)
Runs: 2 runs, 194.2M spots, 26.4G bases, 7.7Gb
Run# of Spots# of BasesSizePublished
SRR1973683197,265,44613.2G3.8Gb2023-04-28
SRR1973683296,939,71813.2G3.8Gb2023-04-28

ID:
22429708

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