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SRX15672425: GSM6234431: Liver chow diet WT biol rep 4; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 35.1M spots, 10.5G bases, 3.1Gb downloads

External Id: GSM6234431_r1
Submitted by: Goodman Cancer Centre, McGill University
Study: Hepatocyte FBXW7-dependent activity of nutrient-sensing nuclear receptors controls systemic energy homeostasis and NASH progression [RNA-Seq]
show Abstracthide Abstract
Nonalcoholic steatohepatitis (NASH) is epidemiologically associated with obesity and diabetes and can lead to liver cirrhosis and hepatocellular carcinoma if left untreated. The intricate signaling pathways that orchestrate hepatocyte energy metabolism and cellular stress, intrahepatic cell crosstalk, as well as interplay between peripheral tissues remain elusive and are crucial for the development of anti-NASH therapies. Herein, we reveal E3 ligase FBXW7 as a key factor regulating hepatic catabolism, stress responses, systemic energy homeostasis, and NASH pathogenesis, with attenuated FBXW7 expression as a feature of advanced NASH. Multiomics analysis and pharmacological intervention showed that loss of FBXW7 function in hepatocytes disrupts a metabolic transcriptional axis conjointly controlled by the nutrient-sensing nuclear receptors ERRa and PPARa, resulting in suppression of fatty acid oxidation, elevated ER stress, apoptosis, immune infiltration, fibrogenesis, and ultimately NASH progression. These results provide the foundation for developing alternative strategies co-targeting ERRa and PPARa for the treatment of NASH. Overall design: RNA-seq analysis of livers (n=4) isolated from WT and ERRa KO mice on a C57BL/6N genetic background fed either a chow or high-fat diet (HFD) for 15 weeks initiated from 6 weeks of age.
Sample: Liver chow diet WT biol rep 4
SAMN28964638 • SRS13370614 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM6234431
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted from frozen liver using a RNeasy Mini Kit (QIAGEN). A total amount of 1 μg RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using NEBNext® UltraTM RNA Library Prep Kit for Illumina® (NEB, USA) following manufacturer's recommendations.
Runs: 1 run, 35.1M spots, 10.5G bases, 3.1Gb
Run# of Spots# of BasesSizePublished
SRR1962181135,133,16110.5G3.1Gb2023-08-18

ID:
22295948

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