U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX15640235: GSM6219590: 1203L; Mus musculus; OTHER
1 ILLUMINA (Illumina NovaSeq 6000) run: 64.9M spots, 19.6G bases, 7.1Gb downloads

External Id: GSM6219590_r1
Submitted by: Biomedical Engineering, University of Michgan
Study: Spatiotemporal mapping of immune and stem cell dysregulation after volumetric muscle loss
show Abstracthide Abstract
Volumetric muscle loss (VML) is an acute trauma that results in persistent inflammation, supplantation of muscle tissue with fibrotic scarring, and decreased muscle function. The cell types, nature of cellular communication, and tissue locations that drive the aberrant VML response have remained elusive. Herein, we used spatial transcriptomics on mouse and canine models of VML and observed VML engenders a unique spatial pro-fibrotic pattern driven by crosstalk between fibrotic and inflammatory macrophages and mesenchymal derived cells. The dysregulated response was conserved between murine and canine VML models, albeit with varying kinetics, and impinged on muscle stem cell mediated repair. Targeting this circuit in a murine model resulted in increased regeneration and reductions in inflammation and fibrosis. Collectively, these results enhance our understanding of the cellular crosstalk that drives aberrant regeneration and provides further insight into possible avenues for fibrotic therapy exploration. Overall design: Spatial gene expression profiling was performed on flash-frozen, OCT embedded muscle tissue from mouse and canine post VML injury. Canine tissues were collected from two animals in different wound locations for a total of three spatial samples. Four replicates were generated for each treatment in mice (vehicle and ITD1) at 7 days post injury, and two replicates were generated for 14 days post injury.
Sample: 1203L
SAMN28924143 • SRS13339459 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM6219590
Instrument: Illumina NovaSeq 6000
Strategy: OTHER
Source: TRANSCRIPTOMIC
Selection: other
Layout: PAIRED
Construction protocol: Tissues were simultaneously flash frozen and OCT embedded according to 10x Genomics demonstrated protocol CG000240 Libraries were prepared according to manufacturer's protocol (10x Genomics demonstrated protocol CG000239). Briefly, 10um tissue sections were placed onto capture areas of visium slides and stained with hematoxylin and eosin, imaged, then permeabilized for 18 minutes (murine) or 24 minutes (canine). cDNAs were synthesized and amplified, followed by library construction.
Runs: 1 run, 64.9M spots, 19.6G bases, 7.1Gb
Run# of Spots# of BasesSizePublished
SRR1958854464,941,50819.6G7.1Gb2023-02-23

ID:
22259411

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...