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SRX1550654: GSM2049240: p62f/f mice AlbCre positive - Specific deletion of p62 in hepatocytes 1; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 28.9M spots, 5.8G bases, 3.6Gb downloads

Submitted by: NCBI (GEO)
Study: p62, upregulated during preneoplasia, induces hepatocellular carcinogenesis by maintaining survival of stressed HCC-initiating cells
show Abstracthide Abstract
p62/SQSTM1 is a ubiquitin-binding autophagy receptor and signaling protein that accumulates in premalignant liver diseases and most hepatocellular carcinomas (HCC). Although p62 was proposed to participate in formation of benign adenomas in autophagy-deficient livers, its role in HCC initiation was not explored. Here we show that p62 is necessary and sufficient for HCC induction in mice and that its high expression level in non-tumor human liver predicts rapid HCC recurrence after curative ablation. High p62 expression is needed for activation of NRF2 and mTORC1, c-Myc induction and protection of HCC-initiating cells from oxidative stress-induced death. Overall design: p62F/F and Tsc1 F/F mice (Mori et al., 2009; Muller et al., 2013) were backcrossed to C57BL/6 mice for at least 7 generations, and then bred with Alb-Cre transgenic mice (also on C57BL/6 background) to generate p62F/F; Alb-Cre (p62?hep) and Tsc1F/F; Alb-Cre (Tsc1?hep)mice, respectively. p62?hep mice were crossed to Tsc1?hep and MUP-uPA mice to generate p62F/F; Tsc1F/F; Alb-Cre (Tsc1/p62?hep) mice and p62?hep/MUP-uPA transgenic mice, respectively. Genotyping was performed as described (Muller et al., 2013). All animal studies were in accordance with NIH guidelines for use and care of live animals and were approved by the UCSD Institutional Animal Care and Use Committee. Mice were maintained in filter-topped cages on autoclaved chow diet (low-fat diet; LFD, composed of 12% fat, 23% protein, 65% carbohydrates based on caloric content) or high-fat diet (HFD, composed of 59% fat, 15% protein, 26% carbohydrates based on caloric content; Bio-Serv) and water at UCSD according to NIH Guidelines.
Sample: p62f/f mice AlbCre positive - Specific deletion of p62 in hepatocytes 1
SAMN04446338 • SRS1267354 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Dissected liver sections were removed, flash frozen on dry ice, and RNA was harvested using Trizol RNA extraction. PolyA RNA was isolated using the NEBNext® Poly(A) mRNA Magnetic Isolation Module and barcoded libraries were made using the NEBNext® Ultra™ Directional RNA Library Prep Kit for Illumina®(NEB, Ipswich MA). Libraries were pooled and single end sequenced (1X75) on the Illumina NextSeq 500 or paired-end sequenced on Illumina HiSeq 2000 using the High output V2 kit (Illumina Inc., San Diego CA).
Experiment attributes:
GEO Accession: GSM2049240
Links:
Runs: 1 run, 28.9M spots, 5.8G bases, 3.6Gb
Run# of Spots# of BasesSizePublished
SRR313097128,937,1195.8G3.6Gb2016-11-23

ID:
2194808

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