GSM6199296: UAMS-1 codYccpA, 6h, sample 3; Staphylococcus aureus; RNA... - SRA

SRX15470432: GSM6199296: UAMS-1 codYccpA, 6h, sample 3; Staphylococcus aureus; RNA-Seq
4 ILLUMINA (NextSeq 550) runs: 6.9M spots, 911.9M bases, 357Mb downloads

External Id: GSM6199296_r1

Submitted by: Pathology and Microbiology, University of Nebraska Medical Center

Study: Interplay of CodY and CcpA in regulating central metabolism and biofilm formation in Staphylococcus aureus

PRJNA842676 • SRP377207 • All experiments • All runs

show Abstracthide Abstract

To determine the contribution and interplay of these two regulators in modulating central metabolism, virulence, and biofilm development we constructed and characterized codY ccpA double mutant in S. aureus UAMS-1. Overall design: Comparative gene expression profiling analysis if RNA-seq data for UAMS-1 WT, codY, ccpA, and CodYCcpA

Sample: UAMS-1 codYccpA, 6h, sample 3

SAMN28680255 • SRS13187532 • All experiments • All runs

Organism: Staphylococcus aureus

Library:

Name: GSM6199296

Instrument: NextSeq 550

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: Universal Prokaryotic RNA-Seq Prokaryotic AnyDeplete Libraries were generated using 100 ng of total RNA from each sample and the Universal Prokaryotic RNA-Seq Prokaryotic AnyDeplete (Tecan Genomics, Inc. 900) following the recommended procedure

Runs: 4 runs, 6.9M spots, 911.9M bases, 357Mb

Run	# of Spots	# of Bases	Size	Published
SRR19416001	1,768,843	235M	93.4Mb	2022-05-30
SRR19416002	1,664,298	221.3M	86Mb	2022-05-30
SRR19416003	1,751,950	232.8M	91.7Mb	2022-05-30
SRR19416004	1,677,480	222.8M	85.9Mb	2022-05-30

ID:: 22029866

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