U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX1528501: GSM2037722: highly downregulated Satb1, replicate 1; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 115.8M spots, 5.8G bases, 3.5Gb downloads

Submitted by: NCBI (GEO)
Study: Satb1 Overexpression Drives Tumor-Promoting Activities In Cancer-Associated Dendritic Cells
show Abstracthide Abstract
Special AT-rich sequence-binding protein-1 (Satb1) governs genome-wide transcriptional programs. Using a new conditional knockout mouse, we found that Satb1 is required for normal differentiation of conventional dendritic cells (DCs). Furthermore, Satb1 governs the differentiation of inflammatory DCs by regulating MHC-II expression through Notch1 signaling. Mechanistically, Satb1 binds to the Notch1 promoter, activating Notch expression and driving RBPJ occupancy of the H2-Ab1 promoter, which activates MHC-II transcription. However, tumor-driven, unremitting expression of Satb1 in activated Zbtb46+ inflammatory DCs that universally infiltrate ovarian tumors results in an immunosuppressive phenotype characterized by increased secretion of tumor-promoting Galectin-1 and IL-6. Correspondingly, specific in vivo silencing of Satb1 in tumor-associated DCs reverses their tumorigenic activity and boosts protective immunity. Therefore, dynamic fluctuations in Satb1 expression govern the generation and immunostimulatory activity of steady-state and inflammatory DCs, but relentless Satb1 overexpression in differentiated DCs converts them into tolerogenic/pro-inflammatory cells that contribute to malignant progression. Overall design: RNA-seq with whild type and knocked-down Satb1
Sample: highly downregulated Satb1, replicate 1
SAMN04397440 • SRS1246132 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was isolated for RNA-Seq using Trizol reagent. RNA-Seq library was prepared using the TruSeq Stranded Total RNA Library Preparation kit (Illumina).
Experiment attributes:
GEO Accession: GSM2037722
Links:
Runs: 1 run, 115.8M spots, 5.8G bases, 3.5Gb
Run# of Spots# of BasesSizePublished
SRR3098529115,831,7945.8G3.5Gb2016-01-14

ID:
2159780

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...