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SRX15014525: GSM6069397: RNA-seq, iPSCs, biol rep2; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 73.2M spots, 3.7G bases, 1.3Gb downloads

External Id: GSM6069397_r1
Submitted by: University of California
Study: Dissecting genetic components associated with eye disease using integrative genomic analysis [RNA-seq]
show Abstracthide Abstract
GWAS studies have revealed thousands of variants strongly associated with AMD, yet connecting these variants to their cognate genes has not been explored. In this study we fine-mapped AMD risk loci and examined long-range cis chromatin interactions at essential genes of RPE function and disease-associated variants in iPSC-induced retinal pigmented epithelium (RPE) and primary RPE. Overall design: RNA-seq from iPSCs (2 replicates), iPSC-induced RPE (3 replicates) and primary RPE (3 replicates)
Sample: RNA-seq, iPSCs, biol rep2
SAMN27914662 • SRS12762996 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM6069397
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: GENOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA was extracted using the RNeasy Mini Kit (QIAGEN #74104) according to its protocol. The TruSeq Stranded mRNA protocol from Illumina was followed for library construction (catalog #RS-122-2101).
Runs: 1 run, 73.2M spots, 3.7G bases, 1.3Gb
Run# of Spots# of BasesSizePublished
SRR1893696173,197,5693.7G1.3Gb2022-04-30

ID:
21479975

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