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SRX14891676: GSM6047738: Control, PC1; Solanum lycopersicum; RNA-Seq
1 DNBSEQ (DNBSEQ-G400) run: 55.6M spots, 8.3G bases, 4.7Gb downloads

External Id: GSM6047738_r1
Submitted by: Sederoff Lab, Plant & Microbial Biology, North Carolina State University
Study: Transcriptome of tomato leaf tissue grown under OSC filters
show Abstracthide Abstract
To characterize plant growth in net zero energy greenhouse models covered with semi-transparent organic solar cells (OSCs), RNA was extracted from tomato leaf tissue. Six experimental treatments were created with three OSC filters: FTAZ:IT-M, PTB7-Th:IEICO-4F, FTAZ:PCBM. Boxes with either a clear glass cover or a spectrally-neutral cover were used as the high light (HC) control and the comparative light intensity (PC) control, respectively. These treatments were divided into 2 experiments. 4 treatments (3 OSC boxes and control) had a consistent light intensity and were called the PPFD Controlled (PC) experiment. The other 4 treatments were the Height Controlled (HC) experiment and had more variation in light intensity between treatments due to a consistent distance from the growth chamber light source (height). Plants in the FP_PC treatment flowered one day later than the PC control. FI_PC flowered one day earlier. Gene expression in samples from the FP_PC treatment had a distinct pattern related to flowering initiation. Overall design: Leaf tissue was sampled from 4 individual plants grown under one of eight light spectra and intensity conditions. Samples were collected under growth conditions.
Sample: Control, PC1
SAMN27621202 • SRS12645005 • All experiments • All runs
Library:
Name: GSM6047738
Instrument: DNBSEQ-G400
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: PureLink RNA Mini on-column kit with TRIzol with on-column DNAse treatment mRNA library was prepped by BGI Genomics Co., Ltd. with polyA selection by an oligo dT library All 31 samples were multiplexed, pooled and loaded together onto a DNBSEQ Technology Platform
Runs: 1 run, 55.6M spots, 8.3G bases, 4.7Gb
Run# of Spots# of BasesSizePublished
SRR1879240855,553,0608.3G4.7Gb2022-04-21

ID:
21325990

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