U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX1471738: GSM1968282: SK-MEL-5 BRD4_050212; Homo sapiens; ChIP-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 37.8M spots, 1.5G bases, 917.3Mb downloads

Submitted by: NCBI (GEO)
Study: CDK7 Inhibition Suppresses Melanoma Growth By Depleting A Super-enhancer Associated "Achilles" Lineage Cluster [ChIP-Seq]
show Abstracthide Abstract
Cutaneous malignant melanoma (CMM) lacks targeted therapies beyond the oft-circumvented BRAF inhibitors. Part of the difficulty in treating melanomas has been attributed to a strong survival program controlled by melanocyte transcription factors such as MITF - a phenomenon first described in melanoma as “lineage dependency.” Recently, a highly selective covalent CDK7 inhibitor (THZ1) has been shown to potently suppress the growth of various cancers through the depletion of master transcription-regulating oncogenes and the disruption of their attendant super-enhancers. We now show that melanoma cells are highly sensitive to CDK7 inhibition and that a melanocyte “lineage cluster,” whose members are transcriptionally driven by super-enhancers, is also strongly suppressed by THZ1. These results point to CDK7 inhibition as a viable strategy to deprive oncogenic transcription and suppress tumor growth in melanoma. Overall design: ChIP-Seq for BRD4 and RNA Pol II in SK-MEL-5 melanoma cells
Sample: SK-MEL-5 BRD4_050212
SAMN04326725 • SRS1199101 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2000
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: Purified immunoprecipitated DNA were prepared for sequencing according to a modified version of the Solexa Genomic DNA protocol. Fragmented DNA was end repaired and subjected to 18 cycles of LM-PCR using oligos provided by Illumina. Amplified fragments between 150 and 300bp (representing shear fragments between 50 and 200nt in length and ~100bp of primer sequence) were isolated by agarose gel electrophoresis and purified. Whole cell extracts were sonicated to solubilize the chromatin. The chromatin extracts containing DNA fragments with an average size of 500 bp were immunoprecipitated using different antibodies.
Experiment attributes:
GEO Accession: GSM1968282
Links:
Runs: 1 run, 37.8M spots, 1.5G bases, 917.3Mb
Run# of Spots# of BasesSizePublished
SRR298241537,777,8831.5G917.3Mb2017-10-30

ID:
2080612

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...