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SRX14566328: GSM5965589: Liver tissue sample [129HC]; Homo sapiens; RNA-Seq
1 ION_TORRENT (Ion Torrent Proton) run: 8.2M spots, 885.2M bases, 560.7Mb downloads

External Id: GSM5965589_r1
Submitted by: Plataforma de Bioinformatica, CIBEREHD
Study: CXCR4 DRIVES HEPATOCYTE REPROGRAMMING IN ALCOHOL-RELATED LIVER DISEASE
show Abstracthide Abstract
Backgruound and aims: Loss of hepatocyte identity is associated with impaired liver function in alcohol-related hepatitis (AH). However, the mechanisms and the impact of hepatocyte reprogramming in liver disease are poorly understood. Here we show that both hepatocytes expressing KRT7 (hepatobiliary (HB) cells) and ductular reaction cells were increased in decompensated cirrhotic patients and AH, but only HB cells correlated with poor liver function, reduced liver synthetic capacity and poor outcome. Transcriptomic analysis of microdissected HB cells revealed the expression of biliary-specific genes and a mild reduction of hepatocyte metabolism. Functional analysis identified pathways involved in hepatocyte reprogramming together with inflammatory, stemness and cancer gene programs. In this context, CXCR4 pathway was highly enriched in HB cells, and CXCR4 correlated with disease severity and reduced expression of hepatocyte transcription factors and albumin. Mechanistically, TGFß induced the expression of CXCR4 in primary hepatocytes, and its ligand CXCL12 promoted hepatocyte reprogramming. Liver overexpression of CXCR4 in chronic liver injury decreased hepatocyte gene expression and promoted liver injury. Pharmacological inhibition of CXCR4 reverted hepatocyte loss of identity and reduced ductular reaction and fibrosis progression. Conclusions: This study shows the association of hepatocyte reprogramming with disease progression and poor outcome in AH. Moreover, we identify CXCR4 as a driver of hepatocyte reprogramming as well as a potential therapeutic target in chronic liver injury. Overall design: KC were isolatrd from decompensated cirrhosis that underwent liver transplantation (n=4) and a control group of patients with liver tumours (except hepatocellular carcinoma) and without underlying liver disease (n=5). Morever, whole liver tissue from the same patients were aso sequenced.
Sample: Liver tissue sample [129HC]
SAMN26871142 • SRS12343324 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM5965589
Instrument: Ion Torrent Proton
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA-Seq analysis was performed using 1-10ng of RNA per sample. For each sample, libraries were created using the AmpliSeq Transcriptome Human Gene Expression Kit (ThermoFisher Scientific, ref. A26325) and the User Guide MAN0010743 (Revision C.0) with minor modifications.
Runs: 1 run, 8.2M spots, 885.2M bases, 560.7Mb
Run# of Spots# of BasesSizePublished
SRR184325318,247,651885.2M560.7Mb2023-04-06

ID:
20782306

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