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SRX1371357: GSM1917004: E11.5_WT1; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 42.1M spots, 4.3G bases, 2.5Gb downloads

Submitted by: NCBI (GEO)
Study: Pet-1 Switches Transcriptional Targets Postnatally to Regulate Maturation of Serotonin Neuron Excitability.
show Abstracthide Abstract
Newborn neurons enter an extended maturation stage, during which they acquire excitability characteristics crucial for development of presynaptic and postsynaptic connectivity. In contrast to earlier specification programs, little is known aboutthe regulatory mechanisms that control neuronal maturation. The Pet-1 ETS (E26 transformation-specific) factor is continuously expressed in serotonin (5-HT) neurons and initially acts in postmitotic precursors to control acquisition of 5-HT transmitter identity. Using a combination of RNA sequencing, electrophysiology, and conditional targeting approaches, we determined gene expression patterns in maturing flow-sorted 5-HT neurons and the temporal requirements for Pet-1 in shaping these patterns for functional maturation of mouse 5-HT neurons. We report a profound disruption of postmitotic expression trajectories in Pet-1 / neurons, which prevented postnatal maturation of 5-HT neuron passive and active intrinsic membrane properties, G-protein signaling, and synaptic responses to glutamatergic, lysophosphatidic, and adrenergic agonists. Unexpectedly, conditional targeting revealed a postnatal stage-specific switch in Pet-1 targets from 5-HT synthesis genes to transmitter receptor genes required for afferent modulation of 5-HT neuron excitability. 5-HT1a autoreceptor expression depended transiently on Pet-1, thus revealing an early postnatal sensitive period for control of 5-HT excitability genes. Chromatin immunoprecipitation followed by sequencing revealed that Pet-1 regulates 5-HT neuron maturation through direct gene activation and repression. Moreover, Pet-1 directly regulates the 5-HT neuron maturation factor Engrailed 1, which suggests Pet-1 orchestrates maturationthrough secondary postmitotic regulatoryfactors. The early postnatal switch in Pet-1targets uncovers a distinct neonatal stage-specific function for Pet-1, during which it promotes maturation of 5-HT neuron excitability. Overall design: 5-HT neuron mRNA profiles of E11.5, E15.5, and postnatal (P1-P3) wild type (WT) and Pet-1-/- mice were generated by deep sequencing, in triplicate, using Illumina HiSeq 2500. Myc-tagged Pet-1 ChIP-seq was performed on E12.5 to E14.5 hindbrains and sequencing using NextSeq 500.
Sample: E11.5_WT1
SAMN04210158 • SRS1130273 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: EYFP+ 5-HT neurons were sorted using a BD FACSAria into Trizol reagent and extracted RNA was Dnase I treated and purified using the RNA Clean & Concentrator-5 kit (Zymo). Purified total RNA was amplified with the SMARTer Ultra-low mRNA-Seq kit (Clontech) or Ovation RNA-Seq System V2 (NuGEN). Dissected YFP+ tissue between the mid-hindbrain boundary and rhombomere 4 of E12.5 to E15.5 hindbrains from Pet-1-/-; ePet-mycPet-1; ePet-EYFP embryos was quickly flash frozen on dry ice. Chromatin was isolated and immunoprecipitated using a ChIP grade, goat anti-Myc antibody (Abcam ab9132, Cambridge, MA, validation report at abcam.com) with proprietary protocols (Active Motif, Carlsbad, CA). RNA libraries were prepared for sequencing using either Clontech SMARTer RNA-seq (E11.5, E15.5C_WT, E15.5C_KO, PN) or NuGen Ovation RNA-Seq v2 (E15.5N_WT, E15.5N_KO). ChIP-seq libraries were prepared using standard Illumina ChIP-seq methods.
Experiment attributes:
GEO Accession: GSM1917004
Links:
Runs: 1 run, 42.1M spots, 4.3G bases, 2.5Gb
Run# of Spots# of BasesSizePublished
SRR277533242,131,0824.3G2.5Gb2016-01-08

ID:
1952602

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