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SRX13578349: GSM5768317: metl-9 mut infected (P.A14)_2; Caenorhabditis elegans; RNA-Seq
1 DNBSEQ (DNBSEQ-G400) run: 12.4M spots, 3.1G bases, 1.1Gb downloads

External Id: GSM5768317_r1
Submitted by: Peking university
Study: Transcriptome sequencing of bristol strain (wild-type), metl-9 KO strain and metl-9 mutation strain upon P.aeruginosa infection
show Abstracthide Abstract
We challenge bristol strain (wild-type), metl-9 KO strain (short as KO, has a 101bp insertion, leads to a truncated protein of 258aa) and metl-9 catalytic-activity mutated strain (short as mut, has N172K, D274G mutations in full-length protein) with P.aeruginosa (P.A14), and observe a discrepant transcriptome pattern between wild-type and KO/mut strains. Plenty of innate immune response genes show different expression patterns upon P.A14 infection between the wild-type strain and KO/mut strain. It indicates the important role of metl-9 and 6mA in worm innate immune response modulation. Overall design: RNA-seq of wild-type, KO or mut strain upon P.A14 infection, or normal condition (OP50).
Sample: metl-9 mut infected (P.A14)_2
SAMN24579311 • SRS11470558 • All experiments • All runs
Library:
Name: GSM5768317
Instrument: DNBSEQ-G400
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA were extracted by Trizol reagent and chloroform extraction. 1)mRNA enrichment and purification: Oligo dT Selection to enrich the mRNA (For total RNA extracted from human whole blood, globin mRNA are depleted ); 2)RNA fragmentation and cDNA synthesis (second-strand cDNA synthesis with dUTP instead of dTTP); 3)End repair, add A and adaptor ligation; 4)PCR; 5)Circularization and make DNB; 6) Sequencing on DNBSEQ platform
Runs: 1 run, 12.4M spots, 3.1G bases, 1.1Gb
Run# of Spots# of BasesSizePublished
SRR1740632812,441,0393.1G1.1Gb2022-01-05

ID:
18867262

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