GSM5747591: WS-UV rep2; Arabidopsis thaliana; RNA-Seq - SRA

SRX13486982: GSM5747591: WS-UV rep2; Arabidopsis thaliana; RNA-Seq
8 ILLUMINA (NextSeq 500) runs: 58.7M spots, 8.9G bases, 3.3Gb downloads

External Id: GSM5747591_r1

Submitted by: School of Biological Sciences, University of Bristol

Study: ELONGATED HYPOCOTYL (HY5) AND HY5 HOMOLOG (HYH) maintain shade avoidance suppression in sunlight

PRJNA791625 • SRP352133 • All experiments • All runs

show Abstracthide Abstract

We show that longer-term inhibition of shade avoidance in Arabidopsis is sustained by ELONGATED HYPOCOTYL 5 (HY5) and HY5 HOMOLOG (HYH) which, together, regulate transcriptional reprogramming of genes involved in hormone signalling and cell wall modification. Overall design: Monitoring of gene expression in Arabidopsis thaliana wild type (Wassilewskija) individuals and hy5/hyh mutants under different light conditions.

Sample: WS-UV rep2

SAMN24298415 • SRS11383048 • All experiments • All runs

Organism: Arabidopsis thaliana

Library:

Name: GSM5747591

Instrument: NextSeq 500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: RNA libraries were prepared for sequencing with the Illumina TruSeq Stranded mRNA Library Preparation Kit (Illumina, Inc., San Diego, USA) RNA libraries were prepared following manufacturer's instructions

Runs: 8 runs, 58.7M spots, 8.9G bases, 3.3Gb

Run	# of Spots	# of Bases	Size	Published
SRR17310119	7,809,933	1.2G	456.2Mb	2023-06-07
SRR17310120	7,651,324	1.2G	444.1Mb	2023-06-07
SRR17310121	7,740,680	1.2G	451.6Mb	2023-06-07
SRR17310122	7,710,471	1.2G	449.9Mb	2023-06-07
SRR17310123	7,072,575	1.1G	397.2Mb	2023-06-07
SRR17310124	6,827,221	1G	382Mb	2023-06-07
SRR17310125	6,924,745	1G	390.2Mb	2023-06-07
SRR17310126	6,946,019	1G	390.9Mb	2023-06-07

ID:: 18678850

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