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SRX13395805: GSM5731351: PTA4; Homo sapiens; RNA-Seq
4 ILLUMINA (Illumina HiSeq 4000) runs: 445.1M spots, 57G bases, 35.7Gb downloads

External Id: GSM5731351_r1
Submitted by: UON
Study: KMT2A-driven cyclin D2 upregulation and chronic inflammation as potential drivers of sporadic parathyroid adenoma pathogenesis
show Abstracthide Abstract
Sporadic parathyroid adenoma (PA) is the most common cause of hyperparathyroidism, but the mechanisms involved in its pathogenesis remain incompletely understood. Here we present a single-cell transcriptomic atlas detailing the cellular differences between human PA and normal parathyroid gland (PG) tissues and delineating the transcriptome of individual cell types. We show that there is a pervasive increase in gene transcription in PA cells (PACs) compared with PG cells (PGCs), with transcriptional upregulation of cyclin D2 driven by the transcriptional coactivator, histone-lysine N-methyltransferase 2A (KMT2A) through the transcription factors signal transducer and activator of transcription 3 (STAT3) and GATA binding protein 3 (GATA3) potentially involved in promoting PAC proliferation. Moreover, we demonstrate that PA tissues are heavily infiltrated with myeloid cells, and that fibroblasts, endothelial cells (ECs), as well as macrophages in the PA microenvironment are commonly enriched with proinflammatory gene signatures relative to their counterparts in PG tissues. Collectively, these results provide new insights into the etiology of PA, where the pathogenesis likely involves the net contribution of the dysregulated KMT2A-STAT3/GATA3-cyclin D2 axis in PACs and the chronic inflammation of the microenvironment. These findings provide practical implications for the treatment of PA through KMT2A targeting and anti-inflammation therapies. Overall design: Five parathyroid glands of patients with sporadic parathyroid adenoma and three parathyroid glands of patients with Thyroid cancer
Sample: PTA4
SAMN23992071 • SRS11298966 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM5731351
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: the cells were resuspended in calcium- and magnesium-free PBS containing 0.04% BSA, followed by centrifugation at 300g for 5 min. The cells were then resuspended in 1mL of ice-cold red blood cell lysis buffer.and incubated at 4 °C for 10 min, followed by the addition of 10 ml of ice-cold PBS and centrifugation at 300g for 10 min. After resuspension, the sample was filtered with a 40-μm cell strainer. Cell viability was then determined using Trypan Blue staining with an automated cell counter. RNA libraries were prepared for sequencing using standard Illumina protocols
Runs: 4 runs, 445.1M spots, 57G bases, 35.7Gb
Run# of Spots# of BasesSizePublished
SRR17215999137,738,18217.6G11Gb2023-09-30
SRR17216000109,072,34714G8.7Gb2023-09-30
SRR1721600163,305,5558.1G5.1Gb2023-09-30
SRR17216002134,996,64517.3G10.8Gb2023-09-30

ID:
18480642

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