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SRX1332635: GSM1907083: NR_si-ctrl-3; Homo sapiens; RNA-Seq
4 ILLUMINA (NextSeq 500) runs: 47.5M spots, 7.2G bases, 3.4Gb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: A Primate lncRNA Mediates Notch Signaling During Neuronal Development by Sequestering miRNA [SHSY5Y cells]
show Abstracthide Abstract
Long non-coding RNAs (lncRNAs) are a diverse category of transcripts with poor conservation and have expanded greatly in primates, particularly in their brain. We identified a lncRNA, which has acquired 16 microRNA response elements (MREs) for miR-143-3p in the Catarrhini branch of primates. This lncRNA termed LncND (neuro-development) gets expressed in neural progenitor cells and then declines in mature neurons. Binding and release of miR-143-3p, by LncND, can control the expression of Notch. Its expression is highest in radial glia cells in the ventricular and outer subventricular zones of human fetal brain. Down-regulation of LncND in neuroblastoma cells reduced cell proliferation and induced neuronal differentiation, an effect phenocopied by miR-143-3p over-expression and supported by RNA-seq analysis. These findings support a role for LncND in miRNA-mediated regulation of Notch signaling in the expansion of the neural progenitor pool of primates and hence contributing to the rapid growth of the cerebral cortex. Overall design: SHSY5Y cells treated either with miR-143-3p mimic or 100 nM of siRNA specific for LncND were sequenced on NextSeq500 platform. Scrambled siRNA or miRNA sequences were used as a negative control.
Sample: NR_si-ctrl-3
SAMN04161382 • SRS1113245 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Cells were harvested after 72h and RNA was extracted using MirVana isolation kit PolyA+ libraries were prepared using Illumina's TrueSeq mRNA Stranded Kit according to the manufacturer’s instructions.
Experiment attributes:
GEO Accession: GSM1907083
Links:
Runs: 4 runs, 47.5M spots, 7.2G bases, 3.4Gb
Run# of Spots# of BasesSizePublished
SRR263999512,158,6481.8G887Mb2016-06-23
SRR263999612,122,3121.8G882.2Mb2016-06-23
SRR263999711,673,4851.8G855.9Mb2016-06-23
SRR263999811,557,5851.7G849.8Mb2016-06-23

ID:
1898082

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