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SRX1332634: GSM1907082: NR_si-ctrl-2; Homo sapiens; RNA-Seq
4 ILLUMINA (NextSeq 500) runs: 42.1M spots, 6.4G bases, 3Gb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: A Primate lncRNA Mediates Notch Signaling During Neuronal Development by Sequestering miRNA [SHSY5Y cells]
show Abstracthide Abstract
Long non-coding RNAs (lncRNAs) are a diverse category of transcripts with poor conservation and have expanded greatly in primates, particularly in their brain. We identified a lncRNA, which has acquired 16 microRNA response elements (MREs) for miR-143-3p in the Catarrhini branch of primates. This lncRNA termed LncND (neuro-development) gets expressed in neural progenitor cells and then declines in mature neurons. Binding and release of miR-143-3p, by LncND, can control the expression of Notch. Its expression is highest in radial glia cells in the ventricular and outer subventricular zones of human fetal brain. Down-regulation of LncND in neuroblastoma cells reduced cell proliferation and induced neuronal differentiation, an effect phenocopied by miR-143-3p over-expression and supported by RNA-seq analysis. These findings support a role for LncND in miRNA-mediated regulation of Notch signaling in the expansion of the neural progenitor pool of primates and hence contributing to the rapid growth of the cerebral cortex. Overall design: SHSY5Y cells treated either with miR-143-3p mimic or 100 nM of siRNA specific for LncND were sequenced on NextSeq500 platform. Scrambled siRNA or miRNA sequences were used as a negative control.
Sample: NR_si-ctrl-2
SAMN04161381 • SRS1113246 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Cells were harvested after 72h and RNA was extracted using MirVana isolation kit PolyA+ libraries were prepared using Illumina's TrueSeq mRNA Stranded Kit according to the manufacturer’s instructions.
Experiment attributes:
GEO Accession: GSM1907082
Links:
Runs: 4 runs, 42.1M spots, 6.4G bases, 3Gb
Run# of Spots# of BasesSizePublished
SRR263999110,764,1931.6G784.8Mb2016-06-23
SRR263999210,765,4301.6G783Mb2016-06-23
SRR263999310,337,8611.6G757.1Mb2016-06-23
SRR263999410,257,7851.5G753.5Mb2016-06-23

ID:
1898081

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