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SRX12813366: GSM5660671: RNA_seq_CO2; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 25.3M spots, 7.6G bases, 2.9Gb downloads

Submitted by: NCBI (GEO)
Study: Epigenetic profiling of microglia-specific gene transcription and chromatin accessibility in mouse forebrain after chronic mild stress
show Abstracthide Abstract
Multiple studies have suggested that stress induces neuroinflammation and contributes to emotion-related behavioral deficits. To study epigenetic changes in microglia after chronic stress, we purified microglia from mouse brain after exposure to chronic unexpected mild stress (CUMS), and then performed RNA-seq and ATAC-seq to study microglia-specific alterations of transcriptome and chromatin accessibility in response to chronic stress. Overall design: Microglia-specific ATAC-seq and RNA-seq in stress and control mice, 3 animals per group.
Sample: RNA_seq_CO2
SAMN22645413 • SRS10758748 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Immediately after microglia purification, total RNA was extracted by using Direct-zol RNA Microprep kit (Zymoresearch Cat#R2062) following manufactory's instruction. RNA-seq library was generated using QIAseq® Stranded RNA Library Kit (Qiagen,180743) according to the manuscript's instruction.
Experiment attributes:
GEO Accession: GSM5660671
Links:
Runs: 1 run, 25.3M spots, 7.6G bases, 2.9Gb
Run# of Spots# of BasesSizePublished
SRR1661230725,289,2657.6G2.9Gb2023-01-01

ID:
17448238

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