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SRX12780617: GSM5657982: #10 iAM-1 D9, P10, ppluc shRNA, n=3; Rattus norvegicus; RNA-Seq
2 ILLUMINA (Illumina NovaSeq 6000) runs: 47.2M spots, 14.6G bases, 4.6Gb downloads

Submitted by: NCBI (GEO)
Study: RNA sequencing in iAM-1 differentiated cells and RnSbk2 knockdown
show Abstracthide Abstract
RNA sequencing in iAM-1 differentiated cells and RnSbk2 knockdown Overall design: Examination of transcriptome of conditionally immortalized neonatal rat atrial myocytes treated with lentiviral shRNA RnSbk2 knockdown constructs
Sample: #10 iAM-1 D9, P10, ppluc shRNA, n=3
SAMN22581371 • SRS10725750 • All experiments • All runs
Library:
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was collected using the RNeasy Mini Kit. The quality of the RNA samples designated for RNA-Seq was confirmed using the Advanced Analytical Fragment Analyzer. cDNA was generated from total RNA samples with RNA integrity numbers of 10 using the NEBNext Ultra Directional RNA library preparation method including polyA enrichment (New England Biolabs, cat# E7760S/L). Sequencing was performed on a NovaSeq 6000 system (Illumina, San Diego, CA). For each sample at least 40 million 150-bp paired-end reads were obtained.
Experiment attributes:
GEO Accession: GSM5657982
Links:
Runs: 2 runs, 47.2M spots, 14.6G bases, 4.6Gb
Run# of Spots# of BasesSizePublished
SRR1657915835,447,79111G3.4Gb2024-04-18
SRR1657915911,728,1623.6G1.1Gb2024-04-18

ID:
17381556

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