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SRX12569172: GSM5621130: H3K27ac_KCl_30min; Mus musculus; ChIP-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 30.7M spots, 6.2G bases, 1.9Gb downloads

External Id: GSM5621130_r1
Submitted by: School of Medicine, University of California, San Diego
Study: Ku70/HP1g are presented at the KCl induced acutely activated enhancers [ChIP-seq]
show Abstracthide Abstract
Ku70/HP1g are serving as the marker for the KCl induced acutely enhancer activation in cortical neurons. Overall design: All ChIP-Seq experiments were designed to investigate the Ku70/HP1g signals at KCl induced neuronal active enhancers.
Sample: H3K27ac_KCl_30min
SAMN22213275 • SRS10526301 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM5621130
Instrument: Illumina NovaSeq 6000
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: PAIRED
Construction protocol: Cells were cross-linked with 1% formaldehyde at room temperature for 10 min. And then the cross-linking was quenched with 0.125M glycine for 5 min. Chromatin was fragmented using a Bioruptor® Pico (Diagenode) for 10 min at high power, with an interval of 30 s between pulses to get around 200bp fragments and precleared using 20 μl Protein G Dynabeads (Life Technologies, Cat# 10009D). Subsequently, the soluble chromatin was incubated with 2-5 μg antibodies at 4°C overnight. Immunoprecipitated complexes were collected using 30 μl Protein G Dynabeads, which have been saturated with PBS/1% BSA over night at 4°C, per reaction. For all ChIPs, after de-crosslinking overnight at 65°C, final ChIP DNA was extracted and purified using QIAquick spin columns (QIAGEN). The libraries were constructed following Illumina's Chip-Seq Sample prep kit.
Runs: 1 run, 30.7M spots, 6.2G bases, 1.9Gb
Run# of Spots# of BasesSizePublished
SRR1629002030,727,3206.2G1.9Gb2022-08-04

ID:
17070542

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