GSM5569887: RNAseq tailbud 8 somite mat del rep1 female; Mus musculus... - SRA

SRX12118197: GSM5569887: RNAseq tailbud 8 somite mat del rep1 female; Mus musculus; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 25.3M spots, 1.9G bases, 784.6Mb downloads

Submitted by: NCBI (GEO)

Study: Maternal Smchd1 regulates Hox gene expression and patterning in the mouse embryo [RNAseq tailbud]

PRJNA761774 • SRP336253 • All experiments • All runs

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RNAseq from somite-matched tailbud tissue from E8-8.5 embryo tailbuds at the 6-11 somite developmental stages Overall design: Our overall design is to compare between Smchd1 control and Smchd1 maternally deleted samples. We have performed RNA-seq in 37 tailbud samples from E8-8.5 mouse embryos, with 6 to 11 somites each. In all cases we compare the Smchd1 maternally deleted to the control, at the matched somite number.

Sample: RNAseq tailbud 8 somite mat del rep1 female

SAMN21363007 • SRS10098444 • All experiments • All runs

Organism: Mus musculus

Library:

Instrument: NextSeq 500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: Quick-RNA Miniprep Kit (Zymo) TruSeq Stranded mRNA kit (Illumina 100ng total RNA extracted with Quick-RNA Miniprep Kit (Zymo) then used as library prep input TruSeq Stranded or non-stranded mRNA kit (Illumina)

Experiment attributes:

GEO Accession: GSM5569887

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 25.3M spots, 1.9G bases, 784.6Mb

Run	# of Spots	# of Bases	Size	Published
SRR15826171	25,277,747	1.9G	784.6Mb	2022-05-22

ID:: 16037558

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