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SRX11916396: GSM5537860: Nintedanib_non_resp_rep1; Homo sapiens; Mus musculus; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 21.6M spots, 3.2G bases, 1.1Gb downloads

Submitted by: NCBI (GEO)
Study: Transcriptomic analysis of Nintedanib, Alpelisib and Nintedanib;Alpelisib treated bladder tumors
show Abstracthide Abstract
Nintedanib is a potent anti-fibrotic angio-kinase inhibitor, which has shown clinical efficacy in combination with chemotherapy in locally advanced muscle invasive BC patients. Nintedanib inhibits Fibroblast Growth Factor receptors (FGFRs), validated targets in patients with BC harboring FGFR3/2 genetic alterations. Here, we aimed at studying its mechanisms of action to understand therapy their combination (n=4). Reads were mapped separately against the human and mouse genomes to differentiate tumor vs. stromal expression changes Overall design: In order to gain insight into the mechanisms underlying Nintedanib and Alpelisib synergism in vivo, we tested the effects of Nintedanib, Alpelisib (BYL719) and their combination on Nintedanib-resistant VM-CUB-1 cells xenografts. We performed RNA sequencing of tumors treated for 7 days with either either vehicle (n=4), Nintedanib [responders (n=2) and non-responders (n=3)], Alpelisib (n=4), or their combination (n=4). Reads were mapped separately against the human and mouse genomes to differentiate tumor vs. stromal expression changes
Sample: Nintedanib_non_resp_rep1
SAMN20990064 • SRS9927211 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was isolated from frozen tissues and cultured cells using ReliaPrep RNA Miniprep Systems (Promega, Z6012). Reverse transcription was performed using TaqMan Reverse Transcription Reagents (ThermoFisher Scientific, N8080234). Libraries for whole-transcriptome sequencing were constructed using the TruSeq RNA Sample Preparation Kit v2 and sequenced using the 75-bp paired-end protocol on a NextSeq500 (Illumina, San Diego, CA, USA).
Experiment attributes:
GEO Accession: GSM5537860
Links:
Runs: 1 run, 21.6M spots, 3.2G bases, 1.1Gb
Run# of Spots# of BasesSizePublished
SRR1561928921,644,4243.2G1.1Gb2023-04-13

ID:
15834526

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