U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX1136498: GSM1846534: ADAR1_NULL_IFN_REP1; Mus musculus; OTHER
1 ILLUMINA (Illumina MiSeq) run: 205,073 spots, 59.5M bases, 29Mb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Quantification of RNA editing in MEF cells of different genetic backgrounds with and without interferon treatment
PRJNA292295 • SRP062161 • All experiments • All runs
show Abstracthide Abstract
We report the application of mmPCR-seq to mouse embryonic fibroblasts. We quantified RNA editing at 557 different loci using a microfluidic multiplex PCR method coupled with deep sequencing. Overall design: RT-PCR amplification of 557 loci from 6 MEF lines with and without interferon treatment to quantify RNA editing levels.
Sample: ADAR1_NULL_IFN_REP1
SAMN03980144 • SRS1027278 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina MiSeq
Strategy: OTHER
Source: TRANSCRIPTOMIC
Selection: other
Layout: PAIRED
Construction protocol: Total RNA was extracted from cells Libraries were prepared by pooling all of the PCR products for a particular sample and barcoding them uniquely using a 15 cycle PCR reaction.
Experiment attributes:
GEO Accession: GSM1846534
Links:
Runs: 1 run, 205,073 spots, 59.5M bases, 29Mb
Run# of Spots# of BasesSizePublished
SRR2148927205,07359.5M29Mb2016-02-03

ID:
1657977

Supplemental Content

Related information

Search details

See more...

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...