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SRX11238245: GSM5402871: sorted CD45+ gene expression batch1 (020218_9); Homo sapiens; RNA-Seq
4 ILLUMINA (Illumina NovaSeq 6000) runs: 614.6M spots, 189.3G bases, 57.2Gb downloads

Submitted by: NCBI (GEO)
Study: 10X genomics single cell GEX and VDJ 5' sequencing of PBMC from Type 1 Diabetes patients treated with Treg therapy alone or plus low dose IL-2
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Background: A previous Phase I study showed that the infusion of autologous Treg cells expanded ex-vivo into recent onset Type 1 Diabetes (T1D) patients had an excellent safety profile, however, the majority of the infused Tregs could no longer be detected in the peripheral blood three months post-infusion (NCT01210664-Treg-T1D Trial). Interleukin-2 (IL-2) is a well-characterized cytokine that has been shown to enhance human Treg cell survival and expansion at low doses in vivo. Therefore, a Phase 1 study (NCT02772679-TILT trial) was conducted combining a single infusion of autologous polyclonal Tregs, expanded ex vivo, followed by one or two 5-day courses of recombinant human low dose IL-2 (ld-IL-2) at 0.3 x 10^6 to 1 x 10^6 units/dose. The infusions had an acceptable safety profile, but all 9 patients failed to maintain C-peptide production at pre-treatment levels. Results: Single cell gene expression analysis revealed that the combination therapy led to a transient increase in the number of infused and endogenous Tregs but also resulted in a significant increase from baseline in a subset of activated NK, Mucosal-associated invariant T (MAIT) and clonal CD8+ T populations from populations Overall design: CD45+ cells were isolated by FACS, combined into 30 pools and sequenced into three distinct batches. The data from each time point of each patient's sample was then deconvoluted using the Demuxlet computational package. The gene expression profile and TCR sequencing of more than 400,000 cells was analyzed Each sequenced sample is a mix of several patients and timepoints.
Sample: sorted CD45+ gene expression batch1 (020218_9)
SAMN19904419 • SRS9284723 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Chromium Single Cell V(D)J Enriched and 5' Gene Expression libraries generation and sequencing under the guidance of the official instruction manual illumina Novaseq sequencing
Experiment attributes:
GEO Accession: GSM5402871
Links:
Runs: 4 runs, 614.6M spots, 189.3G bases, 57.2Gb
Run# of Spots# of BasesSizePublished
SRR14925121153,633,87247.3G14.3Gb2021-09-26
SRR14925122153,538,45047.3G14.3Gb2021-09-26
SRR14925123154,945,04447.7G14.3Gb2021-09-26
SRR14925124152,433,30946.9G14.2Gb2021-09-26

ID:
15006521

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