U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX11237602: GSM5402719: Sow1; Sus scrofa; OTHER
1 ILLUMINA (Illumina NovaSeq 6000) run: 146.9M spots, 44.4G bases, 13.9Gb downloads

Submitted by: NCBI (GEO)
Study: DNA methylation in developing fetal brain of pig
show Abstracthide Abstract
DNA methylation was profiled in a genome-wide manner by Enzymatic Methyl-seq (EM-seq) in fetal brain of both sexes at three gestation days 45, 60 and 90. The analysis showed nearly 3-fold fewer differentially methylated sites (DMSs) between GD90 and GD60 (n=54) compared to that between GD60 and GD45 (n=150). Comparative analysis of the methylation data with the RNA-seq data previously generated from the same gestation times showed an opposition pattern where more number of differentially expressed genes (DEGs) were observed between GD90 and GD60 compared to GD60 and GD45. Overall design: DNA methylation profiling of all 12 samples (6 fetal brain samples and 6 adult blood samples) by enzymatic methyl-seq (EM-seq).
Sample: Sow1
SAMN19903157 • SRS9283891 • All experiments • All runs
Organism: Sus scrofa
Library:
Instrument: Illumina NovaSeq 6000
Strategy: OTHER
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: The reproductive tract was removed from the dam at the abattoir. Individual fetuses, referred to as GD45, GD60, GD90 male or female (M or F) were removed from each uterine horn. No fetuses were taken from the tip of either horn or the body of the uterus. The skin and skull were cut downstream the mid-sagittal plane with a scalpel and removed near the ears. The whole brain was scooped out, weighed, measured at the longest point. Blood was collected from age-matched boars and sows. The animal was restrained using a snare and whole blood was collected with a syringe and needle from the jugular vein and put in ethylenediaminetetraacetic acid (EDTA) tubes to prevent from blood to clot. DNA from fetal brain was isolated from frozen homogenized tissue samples using AllPrep DNA/RNA Mini Kit (Qiagen, Cat No./ID: 80204) as per manufacturer's instruction. DNA from blood was isolated using QIAamp DNA Blood Mini Kit (Qiagen, Cat No./ID: 51104) as per manufacturer's instruction. Libraries were prepared using NEBNext® Ultra™ II DNA Library Prep Kit as per manufacturer's instruction.
Experiment attributes:
GEO Accession: GSM5402719
Links:
Runs: 1 run, 146.9M spots, 44.4G bases, 13.9Gb
Run# of Spots# of BasesSizePublished
SRR14924435146,949,09344.4G13.9Gb2024-06-01

ID:
15005878

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...