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SRX1120742: GSM1833188: CG9754_mutant_rep1_smRNAseq; Drosophila melanogaster; ncRNA-Seq
1 ILLUMINA (Illumina MiSeq) run: 4.5M spots, 163.3M bases, 95.7Mb downloads

Submitted by: NCBI (GEO)
Study: Panoramix enforces piRNA-dependent co-transcriptional silencing (small RNA-Seq)
show Abstracthide Abstract
The Piwi-interacting RNA (piRNA) pathway is a small RNA-based innate immune system that defends germ cell genomes against transposons. In Drosophila ovaries, the nuclear Piwi protein is required for transcriptional silencing of transposons, though the precise mechanisms by which this occurs are unknown. Here we show that CG9754 is a component of Piwi complexes that functions downstream of Piwi and its binding partner, Asterix, in transcriptional silencing. Enforced tethering of CG9754 protein to nascent mRNA transcripts causes co-transcriptional silencing of the source locus and the deposition of repressive chromatin marks. We have named CG9754 Panoramix, and propose that this protein could act as an adaptor, scaffolding interactions between the piRNA pathway and the general silencing machinery that it recruits to enforce transcriptional repression. Overall design: Examination of small RNA levels from nos-GAL4 driven UAS-dsRNA knockdowns of the indicated genes in ovaries of Drosophila melanogaster by deep sequencing.
Sample: CG9754_mutant_rep1_smRNAseq
SAMN03939112 • SRS1013410 • All experiments • All runs
Library:
Instrument: Illumina MiSeq
Strategy: ncRNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Construction protocol: Total RNA from ovaries of 2-3 day old females of the indicated knockdowns was isolated using TRIzol (Invitrogen). Small libraries were prepared as described (Czech et al., 2013 Mol Cell). small RNA cloning (End cloning)
Experiment attributes:
GEO Accession: GSM1833188
Links:
Runs: 1 run, 4.5M spots, 163.3M bases, 95.7Mb
Run# of Spots# of BasesSizePublished
SRR21299784,536,499163.3M95.7Mb2015-10-16

ID:
1634747

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