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SRX11048617: scRNA-seq of liver metastases of colorectal cancer:COL17 liver metastases
1 ILLUMINA (HiSeq X Ten) run: 456.5M spots, 136.9G bases, 61.5Gb downloads

Design: 10x Genomic single-cell RNA seq protocol
Submitted by: Sun Yat-sen university
Study: single-cell RNA sequencing of liver metastases of colorectal cancer
show Abstracthide Abstract
Metastasis is the primary cause of cancer-related mortality in colorectal cancer (CRC) patients. How to improve therapeutic options for patients with metastatic CRC (mCRC) is the core question for CRC treatment. However, the complexity and diversity of stromal context of the tumor microenvironment (TME) in liver metastases of CRC is not fully understood, and its influence on response to chemotherapy is unclear. Here we provide an in-depth analysis of transcriptional landscape of primary CRC, matched liver metastases and blood at single-cell resolution, and perform a systematic examination of transcriptional changes and phenotypic alteration of the TME in response to preoperative chemotherapy (PC).Our study may provide a foundation to investigate the cellular mechanisms underlying liver metastasis of CRC and response to preoperative chemotherapy, and open up new possibilities for predicting and guiding therapeutic responsiveness.
Sample:
SAMN18876208 • SRS9116677 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: COL17_LM
Instrument: HiSeq X Ten
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Runs: 1 run, 456.5M spots, 136.9G bases, 61.5Gb
Run# of Spots# of BasesSizePublished
SRR14710628456,456,833136.9G61.5Gb2021-06-16

ID:
14698840

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