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SRX10993492: GSM5341767: mESC-2; Mus musculus; RNA-Seq
1 ILLUMINA (HiSeq X Ten) run: 26.6M spots, 8G bases, 3.4Gb downloads

Submitted by: NCBI (GEO)
Study: RNA-seq analysis of mouse pluripotent stem cells derived cells
show Abstracthide Abstract
To detect the role of OP9 stromal cells in our optimized 3D self-assembling peptide induction system followed by the OP9 coculture system. First, we used RNA-seq to analyze mouse pluripotent stem cells derived total cells at day5 between the 3D+OP9 and 3D+0.1% group in our hematopoietic differentiation system. In addition, to further evaluate hematopoietic transcriptome differences between Lin-Sca-1+c-kit+CD201+ cells and Lin-Sca-1+c-kit+CD201- cells, we used RNA-seq to analyze mouse pluripotent stem cells derived Lin-Sca-1+c-kit+CD201+ and Lin-Sca-1+c-kit+CD201- cells at day5 in our 3D+OP9 hematopoietic differentiation system.Meanwhile,we used the mouse embryonic stem cell(mESC) as negative control and bone marrow derived Lin-Sca-1+c-kit+CD201+ and fetal liver derived Lin-Sca-1+c-kit+CD201+ as positive control. Overall design: two groups together: 3 sample of 3D+OP9 and 3 sample of 3D+0.1%gel; five groups together : 3 sample of D5-LSKCD201+ 3 sample of D5-LSKCD201- 3 sample of mESC 3 sample of BM-LSKCD201+ 3 sample of FL-LSKCD201+
Sample: mESC-2
SAMN19341804 • SRS9067897 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: HiSeq X Ten
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted from sorted cell samples using TRIzol Reagent (Life Technologies) following the manufacturer's instructions. cDNA libraries were constructed using the VAHTS mRNA-seq v2 Library Prep Kit for Illumina (Vazyme) according to the manufacturer's protocol
Experiment attributes:
GEO Accession: GSM5341767
Links:
Runs: 1 run, 26.6M spots, 8G bases, 3.4Gb
Run# of Spots# of BasesSizePublished
SRR1465497926,626,3408G3.4Gb2021-06-28

ID:
14621629

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