GSM5311686: 9DPA fiber GhWRKY16-RNAi rep6; Gossypium hirsutum; RNA-Seq - SRA

SRX10881873: GSM5311686: 9DPA fiber GhWRKY16-RNAi rep6; Gossypium hirsutum; RNA-Seq
1 ILLUMINA (Illumina HiSeq 3000) run: 20.6M spots, 6.1G bases, 1.7Gb downloads

Submitted by: NCBI (GEO)

Study: Transcriptome deep sequencing (RNA-seq) analysis on 9 DPA fibers from wild type and GhWRKY16-RNAi

PRJNA729992 • SRP319934 • All experiments • All runs

show Abstracthide Abstract

To explore the regulation mechanism of GhWRKY16 in fiber development, we performed a transcriptome deep sequencing (RNA-seq) analysis on 9 DPA fibers from wild type and GhWRKY16-RNAi seeds. We identified 2,186 differentially expressed genes (DEGs), consisting of 1,088 upregulated genes and 1,098 downregulated genes Gene ontology (GO) cluster analysis showed that the DEGs regulated by GhWRKY16 are classified in diverse molecular functions, cellular components and biological processes. Overall design: 9DPA fiber mRNA profiles of wild type and GhWRKY16 RNAi cotton

Sample: 9DPA fiber GhWRKY16-RNAi rep6

SAMN19193837 • SRS8989933 • All experiments • All runs

Organism: Gossypium hirsutum

Library:

Instrument: Illumina HiSeq 3000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: Total RNA extracted from 9 DPA fibers by using RNAprep Pure Polysaccharide Polyphenol Plant Total RNA Extraction Kit (Tiangen, China) RNA libraries were prepared for sequencing using standard Illumina protocols

Experiment attributes:

GEO Accession: GSM5311686

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 20.6M spots, 6.1G bases, 1.7Gb

Run	# of Spots	# of Bases	Size	Published
SRR14537675	20,609,128	6.1G	1.7Gb	2021-05-17

ID:: 14476592

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