U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX10714811: GSM5271197: Capture-C HUDEP2 cells WT rep2; Homo sapiens; OTHER
1 ILLUMINA (NextSeq 2000) run: 8.6M spots, 862.9M bases, 253.2Mb downloads

Submitted by: NCBI (GEO)
Study: HIC2 represses BCL11A transcription to regulate hemoglobin switching during development (Capture-C)
show Abstracthide Abstract
The switch from fetal to adult hemoglobin production has been studied in great depth in part because of its relevance to the treatment of hemolobinopathies. Transcription factor BCL11A, which is essential for repression of the fetal beta-type globin (?-globin) genes after birth, is largely controlled at the level of transcription but the mechanism of BCL11A developmental control is unknown. Here, using a CRISPR-Cas9 screen in human erythroblasts, we identify transcription factor HIC2 as a repressor of BCL11A transcription. HIC2 and BCL11A expression are anti-correlated in fetal and adult erythroblasts. Forced expression of HIC2 in adult erythroblasts silences BCL11A transcription and markedly induces ?-globin expression. HIC2 binds selectively to constituent erythroid developmental BCL11A enhancer to reduce chromatin accessibility and impair access by transcription factor GATA1, resulting in loss of enhancer activity and enhancer-promoter contacts. Conversely, loss of HIC2 in fetal erythroblasts increases enhancer accessibility, enables GATA1 binding and induces BCL11A transcription. HIC2 is unveiled as a critical evolutionarily conserved regulator of globin gene switching by imposing developmental control on the BCL11A gene. Overall design: HIC2 overexpression
Sample: Capture-C HUDEP2 cells WT rep2
SAMN18925794 • SRS8804708 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: NextSeq 2000
Strategy: OTHER
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: Cells were crosslinked with 1% formaldehyde for 10 minutes at room temperature. Fixed cells were lysised in 1mL Cell Lysis Buffer (10mM Tris-HCl pH 8, 10mM NaCl, 0.2% NP-40/Igepal). Nuclei were collected and lysised in 1mL Nuclear Lysis Buffer (50mM Tris-HCl pH 8, 10mM EDTA pH 8, 1% SDS). Chromatin was sonicated at 4 degrees C (Epishear, Active Motif). Chromatin was incubated with antibody and then decrosslink at 65C overnight. Capture-C libraries were generated as described (Davies et al. 2016 Nature Methods).
Experiment attributes:
GEO Accession: GSM5271197
Links:
Runs: 1 run, 8.6M spots, 862.9M bases, 253.2Mb
Run# of Spots# of BasesSizePublished
SRR143622118,629,079862.9M253.2Mb2022-05-27

ID:
14246602

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...